Variant report
| Variant | rs553754060 |
|---|---|
| Chromosome Location | chr7:108969321-108969322 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | JUND | chr7:108969031-108969587 | T-47D | breast: | n/a | n/a |
| 2 | FOXA1 | chr7:108968985-108969467 | T-47D | breast: | n/a | chr7:108969217-108969229 |
| 3 | GATA3 | chr7:108968842-108969508 | T-47D | breast: | n/a | chr7:108969123-108969130 |
| 4 | EP300 | chr7:108969019-108969429 | T-47D | breast: | n/a | chr7:108969224-108969234 |
| 5 | GATA3 | chr7:108969045-108969387 | T-47D | breast: | n/a | chr7:108969123-108969130 |
| 6 | FOXA1 | chr7:108969154-108969383 | T-47D | breast: | n/a | chr7:108969217-108969229 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000230941 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018586 | chr7:108759240-109034145 | Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv429794 | chr7:108763098-109003574 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1016803 | chr7:108786402-109013227 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv539054 | chr7:108786402-109013227 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv831094 | chr7:108806619-108981593 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 6 | nsv532176 | chr7:108905368-109024846 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 7 | nsv888949 | chr7:108918561-108987486 | Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 8 | nsv888950 | chr7:108945741-109040135 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 9 | nsv971142 | chr7:108968898-109001611 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
