Variant report

Variant	rs553772418
Chromosome Location	chr8:61526885-61526886
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:61524875..61526902-chr8:61529551..61531219,2	K562	blood:
2	chr8:61521815..61524778-chr8:61526470..61529848,3	K562	blood:
3	chr8:61520531..61524778-chr8:61525857..61529848,4	K562	blood:
4	chr8:61525465..61527090-chr8:61529519..61532324,2	K562	blood:
5	chr8:61525760..61527520-chr8:61863383..61865720,2	K562	blood:
6	chr8:61525459..61529300-chr8:61532493..61534738,4	K562	blood:
7	chr8:61427063..61431145-chr8:61524680..61528238,3	MCF-7	breast:
8	chr8:61525175..61527465-chr8:61536083..61538610,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104388	Chromatin interaction
ENSG00000251396	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv870164	chr8:61484657-61529482	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv6218	chr8:61485410-61530933	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv1796952	chr8:61492893-61531418	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv3413717	chr8:61526872-61527116	Weak transcription Strong transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61481000-61527400	Weak transcription	Psoas Muscle	Psoas
2	chr8:61500400-61542200	Weak transcription	Hela-S3	cervix
3	chr8:61506000-61532200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr8:61506400-61532400	Weak transcription	NHLF	lung
5	chr8:61508800-61533000	Weak transcription	HUVEC	blood vessel
6	chr8:61512800-61527800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:61513000-61528400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:61515600-61532200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr8:61515600-61533400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:61516000-61532000	Weak transcription	NHDF-Ad	bronchial
11	chr8:61516200-61533200	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr8:61517800-61532200	Weak transcription	Small Intestine	intestine
13	chr8:61517800-61537800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:61518000-61530800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr8:61518000-61532000	Weak transcription	Colon Smooth Muscle	Colon
16	chr8:61518000-61532000	Weak transcription	Fetal Brain Male	brain
17	chr8:61518000-61534000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:61518000-61536600	Weak transcription	Aorta	Aorta
19	chr8:61518200-61527000	Weak transcription	Brain Angular Gyrus	brain
20	chr8:61518200-61530400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:61518200-61531000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:61518200-61531400	Weak transcription	Fetal Brain Female	brain
23	chr8:61518200-61532000	Weak transcription	Brain Substantia Nigra	brain
24	chr8:61518200-61532200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr8:61518200-61532200	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr8:61518200-61532200	Weak transcription	Fetal Thymus	thymus
27	chr8:61518200-61532200	Weak transcription	Ovary	ovary
28	chr8:61518200-61532200	Weak transcription	Pancreas	Pancrea
29	chr8:61518200-61532800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr8:61518200-61533200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr8:61518200-61533200	Weak transcription	A549	lung
32	chr8:61518200-61535000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr8:61518200-61535600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr8:61518200-61537200	Weak transcription	Gastric	stomach
35	chr8:61518200-61537400	Weak transcription	Spleen	Spleen
36	chr8:61518400-61536400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr8:61519000-61535200	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:61519000-61535800	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr8:61519200-61527600	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr8:61519600-61530400	Weak transcription	Fetal Kidney	kidney
41	chr8:61519800-61541800	Weak transcription	Esophagus	oesophagus
42	chr8:61520200-61540000	Weak transcription	Fetal Intestine Small	intestine
43	chr8:61520600-61535200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:61521200-61528000	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr8:61522000-61532400	Weak transcription	Rectal Smooth Muscle	rectum
46	chr8:61522000-61535000	Weak transcription	Thymus	Thymus
47	chr8:61522000-61538000	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr8:61522000-61538400	Weak transcription	Stomach Smooth Muscle	stomach
49	chr8:61522000-61538800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr8:61522200-61529200	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links