Variant report

Variant	rs553780740
Chromosome Location	chr4:45066056-45066057
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2752047	chr4:44968572-45072206	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv980502	chr4:45065237-45077593	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45064800-45066600	Enhancers	Fetal Brain Female	brain
2	chr4:45065200-45066200	Enhancers	Brain Germinal Matrix	brain
3	chr4:45065200-45066200	Enhancers	Fetal Heart	heart
4	chr4:45065400-45066200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:45065400-45066400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr4:45065600-45066200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:45065600-45066400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr4:45065600-45067800	Enhancers	Fetal Stomach	stomach
9	chr4:45065800-45066200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:45065800-45066800	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:45066000-45071400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr4:45066000-45080000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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