Variant report

Variant	rs553782200
Chromosome Location	chr7:65880028-65880029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65686273..65688117-chr7:65877962..65880122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169902	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv981507	chr7:65878773-65886496	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65861800-65880800	Weak transcription	Hela-S3	cervix
2	chr7:65874800-65883600	Weak transcription	HepG2	liver
3	chr7:65875200-65884400	Weak transcription	K562	blood
4	chr7:65876200-65888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:65877000-65888600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:65879000-65880200	Weak transcription	NHLF	lung
7	chr7:65879000-65880400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:65879000-65880400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr7:65879000-65880800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:65879000-65883600	Weak transcription	Stomach Mucosa	stomach
11	chr7:65879000-65890000	Weak transcription	HSMM	muscle
12	chr7:65879000-65891800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:65879000-65893200	Weak transcription	Aorta	Aorta
14	chr7:65879000-65905600	Weak transcription	Lung	lung
15	chr7:65879000-65909000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr7:65879000-65922200	Weak transcription	Small Intestine	intestine
17	chr7:65879200-65880400	Weak transcription	NH-A	brain
18	chr7:65879200-65880600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr7:65879200-65880600	Weak transcription	HUVEC	blood vessel
20	chr7:65879200-65880600	Weak transcription	Osteobl	bone
21	chr7:65879200-65883400	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr7:65879200-65886800	Weak transcription	Brain Hippocampus Middle	brain
23	chr7:65879200-65888600	Weak transcription	Adipose Nuclei	Adipose
24	chr7:65879200-65889600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr7:65879200-65891400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr7:65879200-65893000	Weak transcription	Gastric	stomach
27	chr7:65879200-65893800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:65879200-65894600	Weak transcription	HMEC	breast
29	chr7:65879200-65894800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr7:65879200-65896000	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:65879200-65902000	Weak transcription	Brain Substantia Nigra	brain
32	chr7:65879200-65904000	Weak transcription	Fetal Lung	lung
33	chr7:65879200-65907400	Weak transcription	Esophagus	oesophagus
34	chr7:65879200-65924600	Weak transcription	Brain Anterior Caudate	brain
35	chr7:65879200-65939800	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:65879200-65946000	Weak transcription	NHEK	skin
37	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
38	chr7:65879400-65883600	Weak transcription	Fetal Stomach	stomach
39	chr7:65879400-65884600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:65879400-65888200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr7:65879400-65889400	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:65879400-65889600	Weak transcription	Primary T cells from cord blood	blood
43	chr7:65879400-65889800	Weak transcription	Ovary	ovary
44	chr7:65879400-65890800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr7:65879400-65891200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr7:65879400-65891400	Weak transcription	Colonic Mucosa	Colon
47	chr7:65879400-65892600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:65879400-65900600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:65879400-65901000	Weak transcription	Brain Angular Gyrus	brain
50	chr7:65879400-65901200	Weak transcription	Stomach Smooth Muscle	stomach

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