Variant report

Variant	rs553811626
Chromosome Location	chr9:96411098-96411099
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96355442..96358084-chr9:96410672..96413121,3	MCF-7	breast:
2	chr9:96405323..96407093-chr9:96410616..96412899,2	K562	blood:
3	chr9:96405323..96407583-chr9:96410616..96412899,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893586	chr9:96363859-96493773	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1036609	chr9:96375217-96477641	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv893587	chr9:96383605-96451784	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	esv3389059	chr9:96410731-96413929	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3445482	chr9:96410831-96413929	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96380200-96411800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr9:96384600-96412200	Weak transcription	Stomach Mucosa	stomach
3	chr9:96387000-96411800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:96392200-96412000	Weak transcription	HMEC	breast
5	chr9:96392200-96423600	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr9:96396400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr9:96398200-96411200	Weak transcription	HUVEC	blood vessel
8	chr9:96398200-96413800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr9:96399000-96423400	Strong transcription	Fetal Intestine Large	intestine
10	chr9:96399400-96423600	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr9:96400200-96412000	Weak transcription	Hela-S3	cervix
12	chr9:96400400-96412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:96400400-96412000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr9:96400400-96430600	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:96400600-96411600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr9:96400600-96411800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:96400600-96412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr9:96400800-96411800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr9:96400800-96411800	Weak transcription	Fetal Brain Male	brain
20	chr9:96400800-96411800	Weak transcription	K562	blood
21	chr9:96401000-96411800	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr9:96401000-96411800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr9:96401000-96411800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr9:96401000-96411800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr9:96401000-96412000	Weak transcription	A549	lung
26	chr9:96401000-96430000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:96401000-96438600	Weak transcription	Psoas Muscle	Psoas
28	chr9:96401600-96423400	Strong transcription	Adipose Nuclei	Adipose
29	chr9:96401800-96411800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:96401800-96423400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:96402200-96411600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:96402400-96411800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr9:96402400-96411800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr9:96402600-96430200	Strong transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:96402600-96433600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr9:96402800-96411800	Weak transcription	Fetal Kidney	kidney
37	chr9:96403200-96412000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:96403200-96423000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr9:96403400-96430800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:96403400-96430800	Strong transcription	Liver	Liver
41	chr9:96403800-96412600	Strong transcription	Placenta	Placenta
42	chr9:96404200-96422600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr9:96405000-96423400	Strong transcription	Fetal Thymus	thymus
44	chr9:96405000-96423800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr9:96405200-96423600	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr9:96405200-96429200	Strong transcription	Duodenum Mucosa	Duodenum
47	chr9:96405200-96431400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr9:96405400-96411800	Strong transcription	Lung	lung
49	chr9:96405400-96423000	Strong transcription	Fetal Stomach	stomach
50	chr9:96405400-96423200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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