The 2.0 version of rSNPBase

Variant report

Variant rs553851901
Chromosome Location chr21:40129253-40129254
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr21:40115400-40129600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr21:40124000-40134000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr21:40124200-40131200 Enhancers Primary monocytes fromperipheralblood blood
4 chr21:40124200-40133400 Weak transcription Fetal Intestine Large intestine
5 chr21:40124200-40134200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr21:40125000-40130000 Weak transcription Aorta Aorta
7 chr21:40125200-40132000 Weak transcription Fetal Thymus thymus
8 chr21:40125400-40131200 Weak transcription Ovary ovary
9 chr21:40125400-40132800 Weak transcription Fetal Muscle Leg muscle
10 chr21:40125400-40138800 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr21:40125800-40132400 Weak transcription Fetal Intestine Small intestine
12 chr21:40126400-40139000 Weak transcription Esophagus oesophagus
13 chr21:40126400-40139000 Weak transcription Right Atrium heart
14 chr21:40126600-40130600 Weak transcription Breast Myoepithelial Primary Cells Breast
15 chr21:40127200-40129400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr21:40127200-40129400 Enhancers Muscle Satellite Cultured Cells --
17 chr21:40127200-40129400 Enhancers NHDF-Ad bronchial
18 chr21:40127400-40129400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr21:40127400-40129400 Enhancers NH-A brain
20 chr21:40127400-40132400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
21 chr21:40127400-40132600 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
22 chr21:40127600-40129400 Enhancers Placenta Amnion Placenta Amnion
23 chr21:40127800-40131200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
24 chr21:40127800-40131400 Weak transcription Fetal Stomach stomach
25 chr21:40128200-40144600 Weak transcription Hela-S3 cervix
26 chr21:40128400-40131000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr21:40128400-40131200 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr21:40128400-40131400 Weak transcription Spleen Spleen
29 chr21:40128400-40131800 Weak transcription Primary neutrophils fromperipheralblood blood
30 chr21:40128400-40133200 Weak transcription Placenta Placenta
31 chr21:40128600-40131600 Weak transcription Primary hematopoietic stem cells blood
32 chr21:40128600-40139000 Weak transcription Left Ventricle heart
33 chr21:40128800-40131400 Enhancers NHEK skin
34 chr21:40129000-40130000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr21:40129000-40130400 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr21:40129000-40130800 Weak transcription Fetal Lung lung
37 chr21:40129000-40133400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
38 chr21:40129200-40130200 Weak transcription Monocytes-CD14+_RO01746 blood
39 chr21:40129200-40130600 Weak transcription Colon Smooth Muscle Colon
40 chr21:40129200-40130600 Weak transcription Fetal Heart heart
41 chr21:40129200-40130600 Weak transcription Rectal Smooth Muscle rectum
42 chr21:40129200-40131000 Weak transcription Stomach Smooth Muscle stomach
43 chr21:40129200-40131200 Weak transcription NHLF lung
44 chr21:40129200-40131400 Weak transcription HSMMtube muscle
45 chr21:40129200-40131600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
46 chr21:40129200-40132400 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr21:40129200-40133400 Weak transcription Skeletal Muscle Male skeletal muscle

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Last update: Aug 31, 2015