Variant report

Variant rs553864837
Chromosome Location chr3:195461273-195461274
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:53 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195439000-195465200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
2 chr3:195442200-195475000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
3 chr3:195442400-195468200 Weak transcription Primary T helper naive cells from peripheral blood blood
4 chr3:195442600-195474200 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr3:195442800-195461600 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr3:195442800-195475000 Weak transcription Brain Substantia Nigra brain
7 chr3:195443000-195468000 Weak transcription Primary T helper cells PMA-I stimulated --
8 chr3:195448200-195483800 Weak transcription Placenta Amnion Placenta Amnion
9 chr3:195454800-195462000 Weak transcription Gastric stomach
10 chr3:195456400-195463600 Weak transcription Fetal Heart heart
11 chr3:195456400-195464200 Strong transcription Rectal Smooth Muscle rectum
12 chr3:195456400-195465600 Strong transcription Rectal Mucosa Donor 29 rectum
13 chr3:195456600-195465000 Strong transcription Breast Myoepithelial Primary Cells Breast
14 chr3:195456800-195464000 Weak transcription Fetal Brain Male brain
15 chr3:195456800-195465600 Strong transcription Liver Liver
16 chr3:195457000-195462000 Weak transcription Aorta Aorta
17 chr3:195457200-195464600 Strong transcription Fetal Intestine Small intestine
18 chr3:195457800-195462600 Strong transcription Sigmoid Colon Sigmoid Colon
19 chr3:195460000-195462200 Strong transcription Stomach Smooth Muscle stomach
20 chr3:195460200-195461800 Weak transcription Left Ventricle heart
21 chr3:195460200-195463800 Weak transcription Spleen Spleen
22 chr3:195460400-195461400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
23 chr3:195460400-195461800 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr3:195460400-195462000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
25 chr3:195460400-195462000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr3:195460400-195462000 Weak transcription Esophagus oesophagus
27 chr3:195460400-195462200 Weak transcription Fetal Intestine Large intestine
28 chr3:195460400-195463200 Weak transcription Fetal Brain Female brain
29 chr3:195460400-195465800 Strong transcription Skeletal Muscle Male skeletal muscle
30 chr3:195460400-195466200 Weak transcription Right Ventricle heart
31 chr3:195460400-195467200 Weak transcription Brain Germinal Matrix brain
32 chr3:195460600-195461800 Weak transcription Pancreas Pancrea
33 chr3:195460600-195462000 Weak transcription Adipose Nuclei Adipose
34 chr3:195460600-195462000 Weak transcription Brain Angular Gyrus brain
35 chr3:195460600-195462000 Weak transcription Brain Cingulate Gyrus brain
36 chr3:195460600-195462000 Weak transcription Brain Inferior Temporal Lobe brain
37 chr3:195460600-195462000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
38 chr3:195460600-195462000 Weak transcription Ovary ovary
39 chr3:195460600-195462000 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr3:195460600-195462200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
41 chr3:195460600-195463800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
42 chr3:195460600-195464400 Weak transcription Fetal Adrenal Gland Adrenal Gland
43 chr3:195460600-195465200 Weak transcription Lung lung
44 chr3:195460600-195465600 Weak transcription Duodenum Smooth Muscle Duodenum
45 chr3:195460600-195466600 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr3:195460600-195466600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr3:195460600-195471000 Weak transcription Colon Smooth Muscle Colon
48 chr3:195460600-195473200 Weak transcription Colonic Mucosa Colon
49 chr3:195460800-195461600 Weak transcription Primary T cells from cord blood blood
50 chr3:195460800-195461600 Weak transcription Brain Anterior Caudate brain

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