Variant report

Variant rs553878504
Chromosome Location chr1:46268861-46268862
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:46267800-46269000 Enhancers Fetal Heart heart
2 chr1:46268000-46269000 Flanking Active TSS Stomach Smooth Muscle stomach
3 chr1:46268000-46269000 Flanking Active TSS HSMMtube muscle
4 chr1:46268200-46269000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
5 chr1:46268200-46269000 Flanking Active TSS Hela-S3 cervix
6 chr1:46268200-46269000 Flanking Active TSS Osteobl bone
7 chr1:46268200-46269200 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr1:46268200-46269200 Flanking Active TSS Skeletal Muscle Male skeletal muscle
9 chr1:46268200-46270200 Active TSS Fetal Kidney kidney
10 chr1:46268200-46270800 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
11 chr1:46268400-46269000 Enhancers ES-WA7 Cell Line embryonic stem cell
12 chr1:46268400-46269000 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr1:46268400-46269000 Flanking Active TSS HUES6 Cell Line embryonic stem cell
14 chr1:46268400-46269000 Flanking Active TSS HUES64 Cell Line embryonic stem cell
15 chr1:46268400-46269000 Flanking Active TSS iPS-15b Cell Line embryonic stem cell
16 chr1:46268400-46269000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
17 chr1:46268400-46269000 Flanking Active TSS Brain Angular Gyrus brain
18 chr1:46268400-46269000 Flanking Active TSS Brain Cingulate Gyrus brain
19 chr1:46268400-46269000 Flanking Active TSS Brain Hippocampus Middle brain
20 chr1:46268400-46269000 Flanking Active TSS Brain Inferior Temporal Lobe brain
21 chr1:46268400-46269000 Flanking Active TSS Brain Substantia Nigra brain
22 chr1:46268400-46269000 Flanking Active TSS Colon Smooth Muscle Colon
23 chr1:46268400-46269000 Flanking Active TSS Duodenum Mucosa Duodenum
24 chr1:46268400-46269000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
25 chr1:46268400-46269000 Active TSS Fetal Brain Male brain
26 chr1:46268400-46269000 Flanking Active TSS Rectal Mucosa Donor 29 rectum
27 chr1:46268400-46269000 Flanking Active TSS Rectal Mucosa Donor 31 rectum
28 chr1:46268400-46269000 Flanking Active TSS Rectal Smooth Muscle rectum
29 chr1:46268400-46269000 Flanking Active TSS Stomach Mucosa stomach
30 chr1:46268400-46269000 Flanking Active TSS HepG2 liver
31 chr1:46268400-46269000 Flanking Active TSS K562 blood
32 chr1:46268400-46269000 Flanking Active TSS NH-A brain
33 chr1:46268400-46269200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
34 chr1:46268400-46269200 Flanking Active TSS Dnd41 blood
35 chr1:46268600-46269000 Flanking Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
36 chr1:46268600-46269000 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
37 chr1:46268600-46269000 Flanking Bivalent TSS/Enh hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr1:46268600-46269000 Flanking Active TSS iPS-18 Cell Line embryonic stem cell
39 chr1:46268600-46269000 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
40 chr1:46268600-46269000 Flanking Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr1:46268600-46269000 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
42 chr1:46268600-46269000 Flanking Active TSS Primary T helper memory cells from peripheral blood 2 blood
43 chr1:46268600-46269000 Flanking Active TSS Primary T helper naive cells from peripheral blood blood
44 chr1:46268600-46269000 Flanking Active TSS Primary T helper cells PMA-I stimulated --
45 chr1:46268600-46269000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
46 chr1:46268600-46269000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
47 chr1:46268600-46269000 Flanking Active TSS Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:46268600-46269000 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
49 chr1:46268600-46269000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
50 chr1:46268600-46269000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --

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