Variant report

Variant	rs553881397
Chromosome Location	chr11:8817373-8817374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8715976..8718057-chr11:8817200..8820115,2	K562	blood:
2	chr11:8708277..8712745-chr11:8814108..8817920,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166444	Chromatin interaction
ENSG00000166441	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv553447	chr11:8792622-8825966	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv527920	chr11:8816695-8856822	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8797800-8827200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr11:8800800-8822400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:8800800-8825800	Weak transcription	Brain Angular Gyrus	brain
4	chr11:8800800-8827400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:8801600-8820000	Weak transcription	HSMMtube	muscle
6	chr11:8801600-8827400	Weak transcription	Esophagus	oesophagus
7	chr11:8802200-8819200	Weak transcription	NH-A	brain
8	chr11:8803000-8820600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:8808600-8819400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:8809000-8830200	Weak transcription	Fetal Brain Male	brain
11	chr11:8809200-8826600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr11:8809200-8829200	Weak transcription	Fetal Kidney	kidney
13	chr11:8810600-8820600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:8811800-8827000	Weak transcription	HMEC	breast
15	chr11:8811800-8828600	Weak transcription	Hela-S3	cervix
16	chr11:8811800-8828800	Weak transcription	Aorta	Aorta
17	chr11:8811800-8830400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:8811800-8830600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr11:8812400-8820600	Weak transcription	Right Ventricle	heart
20	chr11:8813800-8817600	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr11:8814200-8828400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:8814600-8817400	Weak transcription	NHEK	skin
23	chr11:8814800-8825400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr11:8815000-8827800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:8815200-8818200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr11:8815200-8818800	Weak transcription	Adipose Nuclei	Adipose
27	chr11:8815200-8826800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:8815400-8818000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:8815400-8818600	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:8815400-8819200	Weak transcription	Fetal Lung	lung
31	chr11:8815400-8820600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr11:8815400-8822000	Weak transcription	HUVEC	blood vessel
33	chr11:8815600-8822600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr11:8815600-8825200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr11:8815800-8817800	Strong transcription	Placenta	Placenta
36	chr11:8815800-8818200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:8815800-8827800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr11:8816000-8817800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr11:8816000-8822000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:8816200-8817600	Strong transcription	NHLF	lung
41	chr11:8816400-8818000	Enhancers	Stomach Mucosa	stomach
42	chr11:8816400-8818600	Genic enhancers	Stomach Smooth Muscle	stomach
43	chr11:8816400-8819200	Weak transcription	Pancreas	Pancrea
44	chr11:8816400-8819400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:8816400-8819400	Weak transcription	HSMM	muscle
46	chr11:8816400-8822200	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr11:8816400-8822400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr11:8816400-8825400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:8816400-8831800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:8816600-8817600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links