Variant report

Variant	rs553899195
Chromosome Location	chr13:50537353-50537354
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	nsv561630	chr13:50525141-50545402	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv517142	chr13:50535863-50545357	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50511400-50537800	Weak transcription	Left Ventricle	heart
2	chr13:50522400-50550600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr13:50529400-50547000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr13:50529600-50550000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:50529800-50539400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr13:50529800-50543200	Weak transcription	Osteobl	bone
7	chr13:50529800-50544800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr13:50530000-50546600	Weak transcription	Fetal Thymus	thymus
9	chr13:50531400-50550400	Weak transcription	NHDF-Ad	bronchial
10	chr13:50532400-50537600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:50532800-50537400	Weak transcription	Brain Substantia Nigra	brain
12	chr13:50533000-50552200	Weak transcription	Ovary	ovary
13	chr13:50533600-50539600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:50534400-50550400	Weak transcription	HSMM	muscle
15	chr13:50535200-50537600	Weak transcription	Liver	Liver
16	chr13:50535600-50547400	Weak transcription	Thymus	Thymus
17	chr13:50536400-50552800	Weak transcription	Fetal Heart	heart
18	chr13:50536600-50538800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr13:50536600-50540600	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr13:50537000-50538000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr13:50537000-50538000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr13:50537000-50538000	ZNF genes & repeats	Psoas Muscle	Psoas
23	chr13:50537200-50539000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood

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