Variant report

Variant	rs553915223
Chromosome Location	chr17:37410295-37410296
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STAC2-1	chr17:37408916-37410550	ENSG00000266753.1
2	lnc-STAC2-1	chr17:37408897-37410550	ENSG00000266753.2

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057470	chr17:37135183-37549816	Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
2	nsv543339	chr17:37135183-37549816	Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
3	nsv932024	chr17:37192290-37850932	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	92 gene(s)	inside rSNPs	diseases
4	nsv833441	chr17:37320807-37476796	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
5	nsv1061084	chr17:37333956-37501598	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
6	nsv1060126	chr17:37333956-37659189	Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
7	nsv1057655	chr17:37333956-37732451	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
8	nsv1066033	chr17:37333956-37795617	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
9	nsv543340	chr17:37333956-37795617	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	78 gene(s)	inside rSNPs	diseases
10	nsv908204	chr17:37349655-37682657	Genic enhancers Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
11	nsv1057057	chr17:37395082-37627025	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
12	nsv1055612	chr17:37409865-37563236	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:37395000-37413000	Weak transcription	HSMMtube	muscle
2	chr17:37395000-37414600	Weak transcription	Psoas Muscle	Psoas
3	chr17:37395200-37417000	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr17:37396400-37416400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr17:37400800-37410600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr17:37401000-37413400	Weak transcription	HSMM	muscle
7	chr17:37401000-37414200	Weak transcription	Fetal Brain Male	brain
8	chr17:37401000-37414200	Weak transcription	NHDF-Ad	bronchial
9	chr17:37401000-37426000	Weak transcription	NHLF	lung
10	chr17:37401000-37433000	Weak transcription	Fetal Heart	heart
11	chr17:37401000-37437000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr17:37401200-37412800	Weak transcription	Colon Smooth Muscle	Colon
13	chr17:37401200-37414000	Weak transcription	Fetal Kidney	kidney
14	chr17:37401200-37414400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr17:37401400-37413800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:37401400-37414000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr17:37401400-37414200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr17:37401400-37416800	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr17:37401400-37417200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr17:37401400-37437400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr17:37401600-37410600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr17:37401600-37416600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr17:37401600-37417000	Weak transcription	K562	blood
24	chr17:37401800-37417000	Weak transcription	Stomach Mucosa	stomach
25	chr17:37402000-37414000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr17:37402000-37417000	Weak transcription	NH-A	brain
27	chr17:37403200-37416200	Weak transcription	Hela-S3	cervix
28	chr17:37404400-37414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr17:37405000-37414200	Weak transcription	Esophagus	oesophagus
30	chr17:37405000-37437000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr17:37405400-37417000	Weak transcription	A549	lung
32	chr17:37406200-37411800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr17:37406200-37415600	Weak transcription	Osteobl	bone
34	chr17:37406800-37425400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr17:37407200-37439200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr17:37407400-37417000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr17:37407600-37427400	Strong transcription	Placenta	Placenta
38	chr17:37407800-37411200	Strong transcription	Stomach Smooth Muscle	stomach
39	chr17:37407800-37431400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr17:37408000-37411200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:37408000-37411200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr17:37408000-37411200	Strong transcription	Primary B cells from cord blood	blood
43	chr17:37408000-37411200	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr17:37408000-37411400	Strong transcription	Liver	Liver
45	chr17:37408000-37413600	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr17:37408000-37414400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr17:37408000-37419200	Strong transcription	Left Ventricle	heart
48	chr17:37408000-37425400	Strong transcription	Fetal Lung	lung
49	chr17:37408000-37427200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr17:37408000-37440200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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