Variant report

Variant rs553938736
Chromosome Location chr16:30198655-30198656
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr16:30195000-30205800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
2 chr16:30195200-30199400 Transcr. at gene 5' and 3' Primary T regulatory cells fromperipheralblood blood
3 chr16:30195400-30199200 Transcr. at gene 5' and 3' Primary T helper naive cells fromperipheralblood blood
4 chr16:30195600-30198800 Transcr. at gene 5' and 3' Primary B cells from peripheral blood blood
5 chr16:30195600-30199200 Transcr. at gene 5' and 3' Primary mononuclear cells fromperipheralblood Blood
6 chr16:30195600-30199600 Transcr. at gene 5' and 3' Primary T cells fromperipheralblood blood
7 chr16:30195800-30198800 Transcr. at gene 5' and 3' Primary hematopoietic stem cells short term culture blood
8 chr16:30195800-30198800 Transcr. at gene 5' and 3' Primary Natural Killer cells fromperipheralblood blood
9 chr16:30195800-30199000 Enhancers K562 blood
10 chr16:30195800-30199800 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
11 chr16:30196000-30198800 Enhancers Fetal Brain Male brain
12 chr16:30196000-30199000 Transcr. at gene 5' and 3' Primary T killer naive cells fromperipheralblood blood
13 chr16:30196000-30199000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
14 chr16:30196000-30199000 Transcr. at gene 5' and 3' Fetal Thymus thymus
15 chr16:30196000-30199800 Transcr. at gene 5' and 3' GM12878-XiMat blood
16 chr16:30196000-30200600 Weak transcription Placenta Amnion Placenta Amnion
17 chr16:30196000-30205800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
18 chr16:30196200-30199000 Enhancers HepG2 liver
19 chr16:30196200-30199600 Weak transcription iPS-15b Cell Line embryonic stem cell
20 chr16:30196200-30199600 Weak transcription Fetal Lung lung
21 chr16:30196200-30201000 Weak transcription NHEK skin
22 chr16:30196400-30198800 Transcr. at gene 5' and 3' Primary monocytes fromperipheralblood blood
23 chr16:30196400-30205800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
24 chr16:30196400-30205800 Weak transcription Brain Substantia Nigra brain
25 chr16:30196400-30205800 Weak transcription Right Atrium heart
26 chr16:30196600-30199000 Transcr. at gene 5' and 3' Primary T cells effector/memory enriched fromperipheralblood blood
27 chr16:30197000-30199200 Enhancers Placenta Placenta
28 chr16:30197200-30198800 Weak transcription Small Intestine intestine
29 chr16:30197200-30199000 Enhancers Fetal Muscle Trunk muscle
30 chr16:30197200-30199200 Transcr. at gene 5' and 3' Primary neutrophils fromperipheralblood blood
31 chr16:30197200-30205800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr16:30197200-30205800 Weak transcription Brain Anterior Caudate brain
33 chr16:30197400-30198800 Genic enhancers Brain Germinal Matrix brain
34 chr16:30197400-30198800 Transcr. at gene 5' and 3' Thymus Thymus
35 chr16:30197400-30199000 Transcr. at gene 5' and 3' Primary T helper 17 cells PMA-I stimulated --
36 chr16:30197400-30199000 Transcr. at gene 5' and 3' Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr16:30197400-30199800 Transcr. at gene 5' and 3' Primary T helper cells PMA-I stimulated --
38 chr16:30197400-30201400 Weak transcription HUES48 Cell Line embryonic stem cell
39 chr16:30197600-30199000 Enhancers Skeletal Muscle Female skeletal muscle
40 chr16:30197600-30199400 Transcr. at gene 5' and 3' Primary T killer memory cells from peripheral blood blood
41 chr16:30197600-30199600 Transcr. at gene 5' and 3' Primary T cells from cord blood blood
42 chr16:30197600-30199600 Transcr. at gene 5' and 3' Primary T helper cells fromperipheralblood blood
43 chr16:30197600-30199800 Genic enhancers Spleen Spleen
44 chr16:30197800-30198800 Transcr. at gene 5' and 3' Primary B cells from cord blood blood
45 chr16:30197800-30198800 Genic enhancers Brain Angular Gyrus brain
46 chr16:30197800-30198800 Active TSS Rectal Smooth Muscle rectum
47 chr16:30197800-30199000 Transcr. at gene 5' and 3' Primary T helper memory cells from peripheral blood 2 blood
48 chr16:30197800-30199000 Flanking Active TSS Duodenum Mucosa Duodenum
49 chr16:30197800-30199400 Enhancers Breast Myoepithelial Primary Cells Breast
50 chr16:30197800-30199400 Genic enhancers Foreskin Fibroblast Primary Cells skin01 Skin

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