Variant report

Variant	rs553941960
Chromosome Location	chr4:87770619-87770620
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:17)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:17 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:87770325-87770809	MCF10A-Er-Src	breast:	n/a	n/a
2	RAD21	chr4:87770472-87770672	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr4:87770307-87770729	Hela-S3	cervix:	n/a	n/a
4	STAT3	chr4:87770458-87770738	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr4:87770292-87770734	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr4:87770292-87770798	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
7	EP300	chr4:87770389-87770677	Hela-S3	cervix:	n/a	n/a
8	FOS	chr4:87770349-87770722	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
9	MYC	chr4:87770408-87770628	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr4:87770272-87770798	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
11	STAT3	chr4:87770268-87770805	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
12	SMC3	chr4:87770461-87770732	Hela-S3	cervix:	n/a	n/a
13	FOS	chr4:87770244-87770736	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
14	POLR2A	chr4:87770292-87770834	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr4:87770356-87770656	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
16	FOS	chr4:87770246-87770733	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
17	STAT3	chr4:87770468-87770764	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:87770586-87770636	NB4	blood:	n/a
2	chr4:87770586-87770636	SK-N-MC	brain:	n/a
3	chr4:87770586-87770636	HL-60	blood:	n/a
4	chr4:87770586-87770636	ECC-1	luminal epithelium:	n/a
5	chr4:87770586-87770636	GM12878	blood:	n/a
6	chr4:87770586-87770636	GM12891	blood:	n/a
7	chr4:87770586-87770636	LNCaP	prostate:	n/a
8	chr4:87770586-87770636	HUVEC	blood vessel:	n/a
9	chr4:87770586-87770636	IMR90	lung:	fetal
10	chr4:87770586-87770636	SAEC	small airway:	n/a
11	chr4:87770586-87770636	AG09319	gingival:	n/a
12	chr4:87770586-87770636	T-47D	breast:	n/a
13	chr4:87770586-87770636	HPAEpiC	pulmonary alveolar:	n/a
14	chr4:87770586-87770636	K562	blood:	n/a
15	chr4:87770586-87770636	HRE	kidney:	n/a
16	chr4:87770586-87770636	AG09309	skin:	n/a
17	chr4:87770586-87770636	NHDF-neo	bronchial:	n/a
18	chr4:87770586-87770636	H1-hESC	embryonic stem cell:	embryo
19	chr4:87770586-87770636	HCT-116	colon:	n/a
20	chr4:87770586-87770636	HRPEpiC	eye:	n/a
21	chr4:87770586-87770636	AG10803	skin:	n/a
22	chr4:87770586-87770636	U87	brain:	n/a
23	chr4:87770586-87770636	NT2-D1	testis:	n/a
24	chr4:87770586-87770636	BE2_C	brain:	n/a
25	chr4:87770586-87770636	GM06990	blood:	n/a
26	chr4:87770586-87770636	HEK293	kidney:	embryo
27	chr4:87770586-87770636	SK-N-SH	brain:	n/a
28	chr4:87770586-87770636	PrEC	prostate:	n/a
29	chr4:87770586-87770636	Caco-2	colon:	n/a
30	chr4:87770586-87770636	HRCEpiC	kidney:	n/a
31	chr4:87770586-87770636	HEEpiC	esophagus:	n/a
32	chr4:87770586-87770636	ProgFib	skin:	n/a
33	chr4:87770586-87770636	A549	lung:	n/a
34	chr4:87770586-87770636	MCF-7	breast:	n/a
35	chr4:87770586-87770636	AG04450	lung:	fetal
36	chr4:87770586-87770636	Hepatocyte	liver:	n/a
37	chr4:87770586-87770636	HCF	heart:	n/a
38	chr4:87770586-87770636	HCM	heart:	n/a
39	chr4:87770586-87770636	GM12892	blood:	n/a
40	chr4:87770586-87770636	NHBE	bronchial:	n/a
41	chr4:87770586-87770636	HIPEpiC	eye:	n/a
42	chr4:87770586-87770636	SK-N-SH_RA	brain:	n/a
43	chr4:87770586-87770636	CMK	blood:	n/a
44	chr4:87770586-87770636	Hela-S3	cervix:	n/a
45	chr4:87770586-87770636	AG04449	skin:	fetal
46	chr4:87770586-87770636	HNPCEpiC	eye:	n/a
47	chr4:87770586-87770636	NH-A	brain:	n/a
48	chr4:87770586-87770636	ovcar-3	ovarian:	n/a
49	chr4:87770586-87770636	HCPEpiC	choroid plexus:	n/a
50	chr4:87770586-87770636	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
SLC10A6	TF binding region
SLC10A6	CpG island

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87767000-87771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:87768000-87770800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:87768200-87771400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:87769000-87770800	Flanking Active TSS	Adipose Nuclei	Adipose
5	chr4:87769200-87771200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:87769600-87771200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:87769600-87771600	Enhancers	Fetal Muscle Trunk	muscle
8	chr4:87769600-87771600	Flanking Active TSS	NHEK	skin
9	chr4:87769600-87776800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:87769800-87771600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr4:87769800-87778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:87770000-87771600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr4:87770200-87771200	Enhancers	Brain Anterior Caudate	brain
14	chr4:87770200-87771200	Enhancers	Brain Cingulate Gyrus	brain
15	chr4:87770200-87771600	Flanking Active TSS	Hela-S3	cervix
16	chr4:87770200-87776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:87770400-87770800	Active TSS	Right Atrium	heart
18	chr4:87770400-87771000	Weak transcription	Esophagus	oesophagus
19	chr4:87770400-87771200	Enhancers	Brain Substantia Nigra	brain
20	chr4:87770400-87771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:87770400-87771400	Weak transcription	Left Ventricle	heart
22	chr4:87770400-87771800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:87770400-87778600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:87770600-87770800	Enhancers	Psoas Muscle	Psoas
25	chr4:87770600-87771200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr4:87770600-87771200	Weak transcription	Spleen	Spleen
27	chr4:87770600-87771400	Enhancers	Brain Hippocampus Middle	brain
28	chr4:87770600-87771600	Enhancers	Brain Angular Gyrus	brain
29	chr4:87770600-87771800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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