The 2.0 version of rSNPBase

Variant report

Variant rs553952542
Chromosome Location chr1:165604527-165604528
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:165601600-165605800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:165601600-165608400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr1:165601600-165615200 Weak transcription Spleen Spleen
4 chr1:165601800-165607400 Enhancers Brain Substantia Nigra brain
5 chr1:165601800-165615200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr1:165602000-165605600 Enhancers ES-I3 Cell Line embryonic stem cell
7 chr1:165602000-165622800 Weak transcription Primary hematopoietic stem cells blood
8 chr1:165602200-165604600 Weak transcription Primary hematopoietic stem cells short term culture blood
9 chr1:165602200-165604600 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr1:165602200-165604800 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
11 chr1:165602200-165605000 Weak transcription Fetal Muscle Trunk muscle
12 chr1:165602200-165605200 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:165602200-165606000 Enhancers Brain Anterior Caudate brain
14 chr1:165602200-165624200 Weak transcription Dnd41 blood
15 chr1:165602400-165604600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr1:165602400-165604600 Enhancers GM12878-XiMat blood
17 chr1:165602400-165604800 Enhancers HUES6 Cell Line embryonic stem cell
18 chr1:165602400-165605200 Enhancers Fetal Lung lung
19 chr1:165602400-165606000 Weak transcription Primary T helper cells fromperipheralblood blood
20 chr1:165602400-165606800 Enhancers Brain Angular Gyrus brain
21 chr1:165602400-165614400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr1:165602400-165614800 Weak transcription Primary T helper naive cells fromperipheralblood blood
23 chr1:165602400-165615000 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr1:165602600-165604800 Enhancers Duodenum Smooth Muscle Duodenum
25 chr1:165602600-165605000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
26 chr1:165602600-165605200 Enhancers A549 lung
27 chr1:165602600-165605400 Weak transcription Fetal Stomach stomach
28 chr1:165602600-165605400 Enhancers Monocytes-CD14+_RO01746 blood
29 chr1:165602600-165605800 Enhancers Right Ventricle heart
30 chr1:165602600-165606000 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr1:165602600-165606200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:165602600-165606600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
33 chr1:165602600-165606600 Weak transcription HepG2 liver
34 chr1:165602600-165610400 Weak transcription Placenta Amnion Placenta Amnion
35 chr1:165602600-165615000 Weak transcription Primary T killer naive cells fromperipheralblood blood
36 chr1:165602800-165604800 Enhancers iPS DF 6.9 Cell Line embryonic stem cell
37 chr1:165603000-165604800 Enhancers Left Ventricle heart
38 chr1:165603000-165606600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr1:165603000-165607000 Weak transcription Aorta Aorta
40 chr1:165603000-165614800 Weak transcription Primary T regulatory cells fromperipheralblood blood
41 chr1:165603000-165619800 Weak transcription HSMMtube muscle
42 chr1:165603200-165604800 Enhancers Colonic Mucosa Colon
43 chr1:165603200-165604800 Enhancers Fetal Brain Male brain
44 chr1:165603200-165604800 Enhancers Ovary ovary
45 chr1:165603200-165605200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
46 chr1:165603200-165605200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr1:165603200-165605400 Enhancers iPS-20b Cell Line embryonic stem cell
48 chr1:165603200-165607200 Enhancers Brain Cingulate Gyrus brain
49 chr1:165603200-165608000 Enhancers Liver Liver
50 chr1:165603400-165604800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived

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Last update: Aug 31, 2015