Variant report

Variant	rs553958040
Chromosome Location	chr6:165425300-165425301
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886925	chr6:165319631-165705488	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv886926	chr6:165358270-165478051	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886927	chr6:165368163-165644276	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv3370614	chr6:165424662-165428860	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
5	esv3350132	chr6:165425085-165425366	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165422200-165425600	Enhancers	HSMM	muscle
2	chr6:165422400-165425800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:165422800-165426800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:165423200-165425400	Enhancers	Fetal Heart	heart
5	chr6:165423400-165425400	Enhancers	NH-A	brain
6	chr6:165423600-165425800	Enhancers	Placenta Amnion	Placenta Amnion
7	chr6:165424000-165425600	Enhancers	Osteobl	bone
8	chr6:165424200-165425400	Enhancers	Placenta	Placenta
9	chr6:165424400-165425600	Enhancers	HSMMtube	muscle
10	chr6:165424800-165426200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:165424800-165426600	Weak transcription	Fetal Kidney	kidney
12	chr6:165425000-165427400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:165425000-165427600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:165425200-165426600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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