Variant report

Variant	rs553958958
Chromosome Location	chr7:39873316-39873317
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf11-9	chr7:39872885-39873392	NONHSAT120235

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv887975	chr7:39858378-40124137	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
5	esv3366065	chr7:39871977-39874075	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39872400-39873400	Bivalent/Poised TSS	Fetal Kidney	kidney
2	chr7:39872400-39873400	Active TSS	HMEC	breast
3	chr7:39872400-39873600	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr7:39872400-39873800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:39872400-39874200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
6	chr7:39872400-39874400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr7:39872400-39874400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
8	chr7:39872600-39873400	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:39872600-39873400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr7:39872600-39873400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
11	chr7:39872600-39873400	Active TSS	Pancreatic Islets	Pancreatic Islet
12	chr7:39872600-39873600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:39872600-39873600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:39872600-39873600	Active TSS	Brain Hippocampus Middle	brain
15	chr7:39872600-39873800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr7:39872600-39874000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:39872600-39874200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
18	chr7:39872600-39874400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
19	chr7:39872600-39875000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr7:39872800-39873400	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:39872800-39873400	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:39872800-39873400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr7:39872800-39873400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:39872800-39873400	Active TSS	Colonic Mucosa	Colon
25	chr7:39872800-39873400	Active TSS	Esophagus	oesophagus
26	chr7:39872800-39873400	Active TSS	Pancreas	Pancrea
27	chr7:39872800-39873400	Active TSS	Psoas Muscle	Psoas
28	chr7:39872800-39873400	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr7:39872800-39873400	Active TSS	Right Atrium	heart
30	chr7:39872800-39873400	Active TSS	HSMM	muscle
31	chr7:39872800-39873600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr7:39872800-39873600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:39872800-39873600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr7:39872800-39873600	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
35	chr7:39872800-39873600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:39872800-39873800	Active TSS	Left Ventricle	heart
37	chr7:39872800-39873800	Active TSS	Right Ventricle	heart
38	chr7:39872800-39874400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
39	chr7:39873000-39873400	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr7:39873000-39873400	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
41	chr7:39873000-39873400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
42	chr7:39873000-39873400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
43	chr7:39873000-39873400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
44	chr7:39873000-39873400	Active TSS	Rectal Smooth Muscle	rectum
45	chr7:39873000-39873400	Bivalent/Poised TSS	A549	lung
46	chr7:39873000-39873400	Active TSS	Hela-S3	cervix
47	chr7:39873000-39873400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
48	chr7:39873000-39873400	Bivalent/Poised TSS	NH-A	brain
49	chr7:39873000-39873400	Active TSS	NHDF-Ad	bronchial
50	chr7:39873000-39873400	Bivalent/Poised TSS	NHLF	lung

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