Variant report

Variant	rs553984097
Chromosome Location	chr5:35668570-35668571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525477	chr5:35530905-35792990	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv880510	chr5:35659239-35709184	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv881146	chr5:35659239-35714851	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1843371	chr5:35668036-35706279	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35618600-35678000	Weak transcription	Left Ventricle	heart
2	chr5:35630600-35707600	Weak transcription	Pancreas	Pancrea
3	chr5:35634800-35673200	Weak transcription	Brain Anterior Caudate	brain
4	chr5:35642600-35673000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:35645200-35673600	Weak transcription	Fetal Kidney	kidney
6	chr5:35651200-35673000	Weak transcription	Ovary	ovary
7	chr5:35656400-35670600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:35657400-35673000	Weak transcription	Fetal Heart	heart
9	chr5:35663000-35669800	Weak transcription	Liver	Liver
10	chr5:35665400-35669000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr5:35665400-35669200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:35665400-35671000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:35665600-35668600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:35665600-35668600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:35665600-35669000	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr5:35665600-35669000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr5:35665600-35677800	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:35665800-35669600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:35665800-35670200	Weak transcription	Dnd41	blood
20	chr5:35666000-35668800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:35666000-35669000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr5:35667000-35668600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr5:35667400-35668600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:35667600-35668600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr5:35667800-35672400	Weak transcription	Fetal Lung	lung
26	chr5:35668200-35670800	Enhancers	Primary T cells from cord blood	blood
27	chr5:35668400-35669000	Enhancers	Primary T helper cells PMA-I stimulated	--

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