Variant report

Variant	rs553999891
Chromosome Location	chr16:79662288-79662289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79658347..79660300-chr16:79660657..79663342,2	MCF-7	breast:
2	chr16:79656220..79658984-chr16:79661969..79663711,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79660400-79662600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr16:79661400-79663400	Enhancers	HMEC	breast
3	chr16:79661600-79663200	Enhancers	NH-A	brain
4	chr16:79661600-79663200	Enhancers	Osteobl	bone
5	chr16:79661800-79663000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:79661800-79663000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr16:79661800-79663000	Enhancers	NHEK	skin
8	chr16:79661800-79663200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr16:79661800-79663200	Enhancers	Primary hematopoietic stem cells	blood
10	chr16:79661800-79663200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:79661800-79663200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr16:79662000-79662600	Enhancers	HSMM	muscle
13	chr16:79662000-79663000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:79662000-79663000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr16:79662000-79663200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr16:79662000-79663200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr16:79662000-79663200	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr16:79662000-79663200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr16:79662200-79662400	Enhancers	HSMMtube	muscle
20	chr16:79662200-79662600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr16:79662200-79662800	Enhancers	Muscle Satellite Cultured Cells	--
22	chr16:79662200-79662800	Enhancers	Placenta	Placenta
23	chr16:79662200-79663000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr16:79662200-79663200	Enhancers	GM12878-XiMat	blood
25	chr16:79662200-79663600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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