Variant report

Variant	rs554008813
Chromosome Location	chr10:92792586-92792587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92791172..92794052-chr10:92801075..92803431,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895887	chr10:92791516-92836763	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92784400-92797800	Weak transcription	Aorta	Aorta
2	chr10:92784600-92796600	Weak transcription	Left Ventricle	heart
3	chr10:92785800-92793000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:92790000-92793600	Enhancers	Dnd41	blood
5	chr10:92790200-92794800	Enhancers	Fetal Thymus	thymus
6	chr10:92790800-92794800	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:92791200-92793200	Weak transcription	Primary T cells from cord blood	blood
8	chr10:92791400-92793200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr10:92792000-92792800	Enhancers	Placenta	Placenta
10	chr10:92792000-92792800	Enhancers	Lung	lung
11	chr10:92792000-92795400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:92792200-92792800	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr10:92792200-92792800	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr10:92792200-92793200	Enhancers	Brain Angular Gyrus	brain
15	chr10:92792200-92793200	Enhancers	Fetal Lung	lung
16	chr10:92792200-92794400	Enhancers	Brain Anterior Caudate	brain
17	chr10:92792200-92794800	Enhancers	Fetal Brain Male	brain
18	chr10:92792200-92795200	Enhancers	Brain Cingulate Gyrus	brain
19	chr10:92792200-92795200	Enhancers	Brain Hippocampus Middle	brain
20	chr10:92792200-92795400	Enhancers	Brain Substantia Nigra	brain
21	chr10:92792200-92795600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:92792200-92795600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr10:92792200-92796600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:92792200-92797200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr10:92792200-92798000	Enhancers	Fetal Muscle Leg	muscle
26	chr10:92792400-92792600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr10:92792400-92792800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:92792400-92793400	Enhancers	Brain Germinal Matrix	brain
29	chr10:92792400-92793400	Enhancers	Osteobl	bone
30	chr10:92792400-92794600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
31	chr10:92792400-92795200	Enhancers	Brain Inferior Temporal Lobe	brain

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