Variant report

Variant	rs554009892
Chromosome Location	chr14:69410345-69410346
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69402982..69422523-chr14:69436263..69448017,46	MCF-7	breast:
2	chr14:69403151..69404894-chr14:69408526..69410384,2	K562	blood:
3	chr14:69403394..69405825-chr14:69407424..69410384,2	K562	blood:
4	chr14:69407443..69410998-chr14:69427616..69430586,3	MCF-7	breast:
5	chr14:69403117..69416483-chr14:69441657..69449888,50	MCF-7	breast:
6	chr14:69390453..69396616-chr14:69408232..69413432,8	MCF-7	breast:
7	chr14:69398641..69402402-chr14:69406063..69410861,5	MCF-7	breast:
8	chr14:69404468..69406535-chr14:69406823..69410783,6	MCF-7	breast:
9	chr14:69402918..69410408-chr14:69410942..69415819,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000259062	Chromatin interaction
ENSG00000258531	Chromatin interaction
ENSG00000072110	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832823	chr14:69388853-69567638	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv564964	chr14:69392264-69423164	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv456333	chr14:69392445-69415962	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv564965	chr14:69392445-69415962	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv3351035	chr14:69410021-69410397	Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69387400-69420400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr14:69394200-69422200	Weak transcription	Dnd41	blood
3	chr14:69397800-69415200	Enhancers	Esophagus	oesophagus
4	chr14:69399000-69423200	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr14:69400200-69416400	Enhancers	Pancreas	Pancrea
6	chr14:69400400-69417000	Enhancers	Fetal Muscle Leg	muscle
7	chr14:69400800-69420400	Enhancers	Fetal Lung	lung
8	chr14:69401800-69412400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr14:69402000-69426200	Enhancers	Primary T cells fromperipheralblood	blood
10	chr14:69402200-69425200	Enhancers	Right Atrium	heart
11	chr14:69402400-69414400	Enhancers	Adipose Nuclei	Adipose
12	chr14:69402400-69416400	Enhancers	Left Ventricle	heart
13	chr14:69402400-69423600	Enhancers	Fetal Heart	heart
14	chr14:69402400-69427000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:69402600-69410800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr14:69402600-69416600	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr14:69403600-69420400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:69403800-69411400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr14:69404200-69410400	Flanking Active TSS	A549	lung
20	chr14:69404200-69412600	Enhancers	Fetal Muscle Trunk	muscle
21	chr14:69404200-69417000	Enhancers	Right Ventricle	heart
22	chr14:69404400-69411000	Enhancers	Placenta	Placenta
23	chr14:69404400-69411800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr14:69404600-69410800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr14:69404600-69412200	Weak transcription	K562	blood
26	chr14:69405000-69415400	Weak transcription	Psoas Muscle	Psoas
27	chr14:69405200-69412400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr14:69405400-69412600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:69405400-69413600	Enhancers	Liver	Liver
30	chr14:69405800-69412000	Weak transcription	Primary B cells from cord blood	blood
31	chr14:69405800-69412000	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr14:69406000-69413000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr14:69406400-69412200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:69406400-69417800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:69406800-69412200	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr14:69406800-69414400	Genic enhancers	Fetal Intestine Small	intestine
37	chr14:69407000-69411200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:69407000-69414600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr14:69407000-69414600	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr14:69407000-69419600	Weak transcription	Fetal Brain Male	brain
41	chr14:69407200-69414800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:69407400-69416400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:69408000-69410400	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr14:69408000-69410600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr14:69408000-69413800	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr14:69408200-69410600	Genic enhancers	Primary T cells from cord blood	blood
47	chr14:69408200-69411000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr14:69408200-69411000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr14:69408200-69411000	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr14:69408200-69411200	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links