Variant report

Variant	rs554019955
Chromosome Location	chr2:151447508-151447509
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151338773..151340469-chr2:151447242..151449602,2	MCF-7	breast:
2	chr2:151446443..151448791-chr2:151456173..151458106,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
4	nsv834415	chr2:151374254-151558649	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv275419	chr2:151447063-151452042	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151443600-151450400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr2:151444400-151448000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:151444400-151448200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:151444400-151448200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:151444600-151448000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr2:151444600-151448200	Weak transcription	HMEC	breast
7	chr2:151444600-151448200	Weak transcription	NHEK	skin
8	chr2:151444600-151452200	Weak transcription	NH-A	brain
9	chr2:151445000-151448000	Weak transcription	Osteobl	bone
10	chr2:151445000-151448200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr2:151445200-151447800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:151445200-151448000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr2:151445200-151448000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr2:151445200-151448400	Weak transcription	HSMM	muscle
15	chr2:151445400-151447600	Weak transcription	NHLF	lung
16	chr2:151445400-151448200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:151446400-151447800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr2:151446400-151448200	Weak transcription	A549	lung
19	chr2:151446600-151447800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr2:151446600-151447800	Weak transcription	Fetal Brain Male	brain
21	chr2:151447000-151447800	Weak transcription	Fetal Brain Female	brain
22	chr2:151447200-151449400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr2:151447400-151448200	Enhancers	NHDF-Ad	bronchial
24	chr2:151447400-151448400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr2:151447400-151448400	Enhancers	Brain Germinal Matrix	brain

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