Variant report

Variant	rs554032250
Chromosome Location	chr8:98961302-98961303
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:98961024..98963389-chr8:99054505..99057436,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156482	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032904	chr8:98756076-99476925	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv539687	chr8:98756076-99476925	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv1028055	chr8:98780445-98977746	Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv891214	chr8:98849303-98990399	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv891215	chr8:98910287-98980663	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv528695	chr8:98960813-99022009	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:98938200-98969200	Weak transcription	Colonic Mucosa	Colon
2	chr8:98941000-98968000	Weak transcription	Esophagus	oesophagus
3	chr8:98945600-98970200	Weak transcription	Spleen	Spleen
4	chr8:98950400-98964600	Weak transcription	Pancreas	Pancrea
5	chr8:98952200-98962200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:98955600-98962200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr8:98955600-98962400	Weak transcription	Fetal Kidney	kidney
8	chr8:98956600-98962400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:98956600-98968800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr8:98956600-98973600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:98957000-98961800	Weak transcription	Brain Angular Gyrus	brain
12	chr8:98957000-98962000	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr8:98957000-98962000	Weak transcription	Brain Substantia Nigra	brain
14	chr8:98957000-98962400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:98957000-98962600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:98957000-98962800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:98957000-98963200	Weak transcription	NH-A	brain
18	chr8:98957200-98962400	Weak transcription	NHLF	lung
19	chr8:98957200-98962400	Weak transcription	Osteobl	bone
20	chr8:98957200-98962600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:98957200-98962600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr8:98957200-98963000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:98957200-98963200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:98957200-98970800	Weak transcription	Colon Smooth Muscle	Colon
25	chr8:98957200-98973600	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr8:98957400-98963000	Weak transcription	Fetal Heart	heart
27	chr8:98957600-98961800	Weak transcription	Brain Hippocampus Middle	brain
28	chr8:98957600-98962000	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr8:98957600-98962600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:98957600-98962800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr8:98957600-98963000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:98957600-98963000	Weak transcription	Adipose Nuclei	Adipose
33	chr8:98957600-98963000	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr8:98957600-98963200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr8:98957800-98963000	Weak transcription	Right Atrium	heart
36	chr8:98957800-98963000	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr8:98957800-98969200	Weak transcription	Left Ventricle	heart
38	chr8:98958200-98962600	Weak transcription	Fetal Muscle Leg	muscle
39	chr8:98958600-98962200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr8:98958800-98962800	Weak transcription	Fetal Lung	lung
41	chr8:98959400-98962000	Weak transcription	Fetal Stomach	stomach
42	chr8:98959600-98961400	Weak transcription	Ovary	ovary
43	chr8:98960200-98961800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:98960800-98962000	Weak transcription	NHDF-Ad	bronchial
45	chr8:98961000-98962200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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