Variant report

Variant	rs554077687
Chromosome Location	chr10:4689961-4689962
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4681477..4684219-chr10:4687339..4690160,2	K562	blood:
2	chr10:3826834..3829522-chr10:4687271..4690305,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv1798456	chr10:4689138-4731081	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv1817443	chr10:4689138-4731081	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1831014	chr10:4689138-4731081	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv1838419	chr10:4689138-4731081	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	esv1805926	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	esv1809203	chr10:4689842-4720626	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv1840346	chr10:4689842-4720626	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	esv1842933	chr10:4689842-4720626	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv1848476	chr10:4689842-4720626	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4680600-4694200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:4680600-4703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:4680800-4692800	Weak transcription	Aorta	Aorta
4	chr10:4682800-4690800	Weak transcription	Psoas Muscle	Psoas
5	chr10:4682800-4693800	Weak transcription	NHEK	skin
6	chr10:4682800-4694000	Weak transcription	HMEC	breast
7	chr10:4684400-4692200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:4685800-4692600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:4688000-4692600	Weak transcription	Fetal Kidney	kidney
10	chr10:4688400-4690000	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:4688800-4690000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr10:4688800-4690000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:4688800-4690200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:4688800-4694800	Enhancers	Dnd41	blood
15	chr10:4689000-4690200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr10:4689000-4690200	Enhancers	Osteobl	bone
17	chr10:4689200-4690000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr10:4689200-4691600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr10:4689400-4690000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:4689400-4690600	Enhancers	HUVEC	blood vessel
21	chr10:4689400-4691000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr10:4689400-4692400	Weak transcription	NH-A	brain
23	chr10:4689400-4692600	Weak transcription	HSMM	muscle
24	chr10:4689400-4694800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:4689600-4690000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr10:4689600-4690800	Enhancers	Primary hematopoietic stem cells	blood
27	chr10:4689600-4692200	Weak transcription	NHDF-Ad	bronchial
28	chr10:4689800-4691000	Weak transcription	HSMMtube	muscle
29	chr10:4689800-4692200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr10:4689800-4692400	Weak transcription	Adipose Nuclei	Adipose

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