Variant report

Variant	rs554089846
Chromosome Location	chr6:45879430-45879431
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1021917	chr6:45879064-45898314	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
3	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
4	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose
6	chr6:45870000-45881800	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr6:45870200-45879600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:45870400-45880600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:45870800-45881200	Weak transcription	Placenta	Placenta
10	chr6:45871000-45881800	Weak transcription	Lung	lung
11	chr6:45871200-45884400	Weak transcription	Psoas Muscle	Psoas
12	chr6:45871200-45885600	Weak transcription	Spleen	Spleen
13	chr6:45876200-45882200	Strong transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:45876400-45881800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr6:45877200-45882000	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr6:45877400-45882400	Strong transcription	Left Ventricle	heart
17	chr6:45878000-45879600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:45878400-45880000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:45878400-45880000	Strong transcription	Fetal Intestine Small	intestine
20	chr6:45878400-45882400	Strong transcription	Skeletal Muscle Male	skeletal muscle
21	chr6:45878600-45882400	Strong transcription	Fetal Intestine Large	intestine
22	chr6:45878800-45879600	Weak transcription	Right Atrium	heart
23	chr6:45879200-45882200	Strong transcription	Rectal Mucosa Donor 31	rectum
24	chr6:45879400-45879600	Enhancers	Stomach Smooth Muscle	stomach
25	chr6:45879400-45881400	Strong transcription	Right Ventricle	heart
26	chr6:45879400-45882000	Strong transcription	Sigmoid Colon	Sigmoid Colon

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