Variant report

Variant	rs554090876
Chromosome Location	chr13:95358278-95358279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BACH1	chr13:95357752-95358407	H1-hESC	embryonic stem cell:	n/a	n/a
2	MAX	chr13:95357175-95358521	H1-hESC	embryonic stem cell:	n/a	chr13:95358229-95358238
3	E2F6	chr13:95356949-95358691	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95357906..95359959-chr13:95361552..95364059,2	MCF-7	breast:
2	chr13:95325863..95327596-chr13:95357586..95359779,2	MCF-7	breast:

Variant related genes	Relation type
LINC00391	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv1813549	chr13:95333331-95377127	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv1824604	chr13:95357807-95365771	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95354600-95358600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
2	chr13:95355800-95359600	Weak transcription	Pancreas	Pancrea
3	chr13:95356400-95358600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:95357200-95358400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr13:95357200-95359600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
6	chr13:95357400-95358400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
7	chr13:95357600-95360800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr13:95357800-95359600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
9	chr13:95358000-95358400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
10	chr13:95358000-95358400	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:95358000-95358600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr13:95358000-95358600	Bivalent Enhancer	Brain Anterior Caudate	brain
13	chr13:95358200-95358400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr13:95358200-95358400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr13:95358200-95358400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
16	chr13:95358200-95358400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr13:95358200-95358400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr13:95358200-95358400	Bivalent Enhancer	Brain Hippocampus Middle	brain
19	chr13:95358200-95358600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:95358200-95358600	Enhancers	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links