Variant report

Variant	rs554091399
Chromosome Location	chr10:4260007-4260008
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4242485..4244025-chr10:4258479..4260771,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4255000-4263200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:4256000-4263400	Weak transcription	HSMM	muscle
3	chr10:4257000-4260400	Enhancers	Fetal Heart	heart
4	chr10:4257200-4260400	Enhancers	Small Intestine	intestine
5	chr10:4257400-4282400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:4258000-4260800	Weak transcription	HSMMtube	muscle
7	chr10:4258400-4263200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:4259200-4260200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:4259200-4260200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:4259400-4262000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr10:4259600-4260200	Active TSS	Brain Anterior Caudate	brain
12	chr10:4259600-4260200	Enhancers	Fetal Intestine Large	intestine
13	chr10:4259600-4260200	Enhancers	Left Ventricle	heart
14	chr10:4259600-4260200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
15	chr10:4259600-4260400	Active TSS	Colonic Mucosa	Colon
16	chr10:4259800-4260200	Enhancers	H1 Cell Line	embryonic stem cell
17	chr10:4259800-4260200	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr10:4259800-4260200	Enhancers	Right Atrium	heart
19	chr10:4259800-4260200	Enhancers	Right Ventricle	heart
20	chr10:4259800-4260400	Enhancers	Aorta	Aorta
21	chr10:4259800-4260400	Active TSS	Rectal Smooth Muscle	rectum
22	chr10:4259800-4261800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr10:4259800-4261800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr10:4260000-4260200	Active TSS	Stomach Smooth Muscle	stomach
25	chr10:4260000-4260400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr10:4260000-4260400	Enhancers	Colon Smooth Muscle	Colon
27	chr10:4260000-4260400	Active TSS	Sigmoid Colon	Sigmoid Colon
28	chr10:4260000-4262000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr10:4260000-4262200	Active TSS	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links