Variant report

Variant	rs554092585
Chromosome Location	chr12:32877338-32877339
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1051667	chr12:32871860-32919673	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1042661	chr12:32871860-32928833	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
4	nsv1050779	chr12:32872999-32921973	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	esv3327926	chr12:32876635-32878733	Strong transcription Weak transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv976594	chr12:32876718-32880505	Strong transcription Weak transcription Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32835000-32902600	Weak transcription	Gastric	stomach
2	chr12:32835000-32902800	Weak transcription	Small Intestine	intestine
3	chr12:32851400-32906800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr12:32853000-32902200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:32853400-32879200	Weak transcription	Fetal Heart	heart
6	chr12:32859200-32879200	Weak transcription	Pancreas	Pancrea
7	chr12:32859200-32890600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr12:32859600-32895000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:32860600-32879200	Weak transcription	Colonic Mucosa	Colon
10	chr12:32862400-32889400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:32862600-32894200	Weak transcription	Aorta	Aorta
12	chr12:32862600-32896400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr12:32865000-32878600	Weak transcription	Thymus	Thymus
14	chr12:32865000-32889600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr12:32865000-32893000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr12:32865000-32904400	Weak transcription	Stomach Mucosa	stomach
17	chr12:32865200-32889200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr12:32865400-32879000	Weak transcription	Fetal Brain Male	brain
19	chr12:32865400-32884600	Weak transcription	Brain Substantia Nigra	brain
20	chr12:32865400-32892600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr12:32866600-32881000	Weak transcription	Brain Germinal Matrix	brain
22	chr12:32867000-32878200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr12:32867200-32879000	Weak transcription	Fetal Brain Female	brain
24	chr12:32868600-32883200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr12:32869600-32892800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr12:32871200-32880000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
27	chr12:32871200-32881000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr12:32871200-32881000	Strong transcription	Duodenum Mucosa	Duodenum
29	chr12:32871200-32882000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr12:32871200-32883000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr12:32871200-32904600	Strong transcription	Dnd41	blood
32	chr12:32871400-32879800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr12:32871400-32881200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr12:32871400-32881600	Strong transcription	Placenta	Placenta
35	chr12:32871400-32881600	Strong transcription	GM12878-XiMat	blood
36	chr12:32871400-32881800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:32871400-32881800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr12:32871400-32881800	Strong transcription	HSMM	muscle
39	chr12:32871400-32888200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr12:32871400-32892200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:32871400-32905800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr12:32871400-32906000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr12:32871400-32906000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr12:32871400-32906000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr12:32871400-32906200	Strong transcription	Primary monocytes fromperipheralblood	blood
46	chr12:32871400-32906200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr12:32871400-32906600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr12:32871400-32906600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr12:32871400-32906800	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr12:32871400-32907000	Strong transcription	Monocytes-CD14+_RO01746	blood

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