Variant report

Variant	rs554168157
Chromosome Location	chr6:145272249-145272250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv1850377	chr6:145199259-145319640	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv886742	chr6:145269757-145376903	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145271800-145274200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:145272000-145273400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:145272000-145274200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr6:145272000-145274200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:145272000-145275400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr6:145272000-145275400	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr6:145272000-145275800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:145272200-145272600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:145272200-145272800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:145272200-145273200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:145272200-145273200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr6:145272200-145274400	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr6:145272200-145274400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:145272200-145275400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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