Variant report

Variant	rs554168440
Chromosome Location	chr6:128434942-128434943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:128427870..128430111-chr6:128432750..128435472,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv604643	chr6:128359362-128493991	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv604644	chr6:128394889-128486139	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv886649	chr6:128399657-128808054	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv886650	chr6:128403745-128513395	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1031827	chr6:128418702-128497881	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2763955	chr6:128418714-128436415	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv604645	chr6:128421762-128437136	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv528869	chr6:128421762-128496557	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv604646	chr6:128421762-128531651	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv604647	chr6:128421762-128547177	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv16561	chr6:128432770-128437573	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv604648	chr6:128433961-128436392	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv604649	chr6:128433961-128437136	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv604650	chr6:128433961-128437370	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv604651	chr6:128434273-128441606	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv604652	chr6:128434932-128437370	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128404000-128438000	Weak transcription	Fetal Thymus	thymus
2	chr6:128411600-128445600	Weak transcription	HepG2	liver
3	chr6:128419800-128455600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:128425000-128452600	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:128425200-128435200	Weak transcription	Gastric	stomach
6	chr6:128428000-128452000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:128432200-128448200	Weak transcription	Primary B cells from cord blood	blood
8	chr6:128433800-128441000	Weak transcription	Pancreas	Pancrea
9	chr6:128434200-128435400	Weak transcription	Left Ventricle	heart
10	chr6:128434200-128435400	Weak transcription	Ovary	ovary
11	chr6:128434200-128435800	Enhancers	Liver	Liver
12	chr6:128434200-128436200	Weak transcription	Right Ventricle	heart
13	chr6:128434200-128437800	Weak transcription	Aorta	Aorta
14	chr6:128434200-128439000	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr6:128434200-128439200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:128434200-128439200	Weak transcription	NHLF	lung
17	chr6:128434200-128442800	Weak transcription	Thymus	Thymus
18	chr6:128434200-128444000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:128434400-128435000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:128434400-128435400	Weak transcription	Right Atrium	heart
21	chr6:128434400-128437800	Enhancers	Fetal Heart	heart
22	chr6:128434400-128439000	Weak transcription	NHDF-Ad	bronchial
23	chr6:128434400-128439200	Weak transcription	HSMM	muscle
24	chr6:128434400-128439200	Weak transcription	Osteobl	bone
25	chr6:128434400-128439400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:128434400-128439800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr6:128434400-128445600	Weak transcription	Fetal Intestine Small	intestine
28	chr6:128434400-128449400	Weak transcription	Brain Angular Gyrus	brain
29	chr6:128434400-128455800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:128434400-128456800	Weak transcription	Fetal Stomach	stomach
31	chr6:128434800-128436400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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