Variant report

Variant	rs554195819
Chromosome Location	chr15:76198012-76198013
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:76119288..76121782-chr15:76196929..76199801,2	MCF-7	breast:
2	chr15:76043391..76046153-chr15:76197743..76199339,2	K562	blood:
3	chr15:76042074..76044891-chr15:76197743..76199352,2	K562	blood:
4	chr15:76196519..76198808-chr15:76210180..76211825,2	MCF-7	breast:
5	chr15:76135493..76137289-chr15:76195431..76198634,3	MCF-7	breast:
6	chr15:76106000..76108161-chr15:76197169..76199815,2	K562	blood:
7	chr15:76134186..76138083-chr15:76192925..76200499,13	K562	blood:
8	chr15:76197876..76200191-chr15:76201024..76203742,3	K562	blood:
9	chr15:76196710..76199163-chr15:76204144..76205756,2	MCF-7	breast:
10	chr15:76133513..76135686-chr15:76197077..76199300,3	K562	blood:
11	chr15:76194745..76198135-chr15:76223912..76227637,3	MCF-7	breast:
12	chr15:76197909..76200277-chr15:76201455..76203414,2	MCF-7	breast:
13	chr15:76133681..76139746-chr15:76193985..76199740,23	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000167196	Chromatin interaction
ENSG00000140367	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531903	chr15:75889302-76342128	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv1044733	chr15:76120924-76228880	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv1053717	chr15:76196674-76314542	Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv1040053	chr15:76197988-76314542	Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76195800-76198200	Active TSS	iPS-15b Cell Line	embryonic stem cell
2	chr15:76197000-76200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:76197000-76200600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr15:76197000-76200600	Weak transcription	Left Ventricle	heart
5	chr15:76197000-76205800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:76197000-76206200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:76197000-76210800	Weak transcription	Aorta	Aorta
8	chr15:76197000-76214600	Weak transcription	Small Intestine	intestine
9	chr15:76197200-76198200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr15:76197200-76198200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:76197200-76198400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr15:76197200-76200000	Weak transcription	Fetal Stomach	stomach
13	chr15:76197200-76200600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr15:76197200-76200600	Weak transcription	Fetal Intestine Small	intestine
15	chr15:76197200-76202200	Weak transcription	Fetal Lung	lung
16	chr15:76197200-76205400	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr15:76197200-76205400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr15:76197200-76205400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr15:76197200-76205400	Weak transcription	Brain Germinal Matrix	brain
20	chr15:76197200-76205400	Weak transcription	Rectal Smooth Muscle	rectum
21	chr15:76197200-76205600	Weak transcription	Ovary	ovary
22	chr15:76197200-76206000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr15:76197200-76206000	Weak transcription	Brain Angular Gyrus	brain
24	chr15:76197200-76206200	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr15:76197200-76206600	Weak transcription	Thymus	Thymus
26	chr15:76197200-76216800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:76197200-76216800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:76197400-76198200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr15:76197400-76198200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:76197400-76198200	Enhancers	Pancreatic Islets	Pancreatic Islet
31	chr15:76197400-76198200	Enhancers	Gastric	stomach
32	chr15:76197400-76198200	Genic enhancers	Sigmoid Colon	Sigmoid Colon
33	chr15:76197400-76198400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr15:76197400-76198400	Transcr. at gene 5' and 3'	HepG2	liver
35	chr15:76197400-76198400	Transcr. at gene 5' and 3'	HMEC	breast
36	chr15:76197400-76198600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr15:76197400-76198600	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr15:76197400-76198600	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr15:76197600-76198200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr15:76197600-76198200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:76197600-76198200	Transcr. at gene 5' and 3'	K562	blood
42	chr15:76197600-76198400	Genic enhancers	Muscle Satellite Cultured Cells	--
43	chr15:76197600-76198400	Enhancers	Liver	Liver
44	chr15:76197600-76198400	Strong transcription	Fetal Kidney	kidney
45	chr15:76197600-76198400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:76197600-76198600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:76197600-76198600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:76197600-76198600	Transcr. at gene 5' and 3'	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr15:76197600-76198600	Genic enhancers	Psoas Muscle	Psoas
50	chr15:76197600-76198600	Transcr. at gene 5' and 3'	GM12878-XiMat	blood

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