Variant report

Variant	rs554200612
Chromosome Location	chr6:35479509-35479510
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35476971..35479724-chr6:35699932..35701695,3	MCF-7	breast:
2	chr6:35474441..35476713-chr6:35477709..35479563,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
2	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
3	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
6	esv2761067	chr6:35471246-35573245	Weak transcription Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv1022435	chr6:35476562-35556141	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv1034786	chr6:35476562-35564799	Genic enhancers Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
9	nsv1031987	chr6:35476562-35579375	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	esv3421979	chr6:35478924-35481222	Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35477400-35480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:35478400-35479800	Enhancers	Fetal Heart	heart
3	chr6:35478400-35480000	Weak transcription	Spleen	Spleen
4	chr6:35478600-35479600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr6:35478600-35480800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:35478800-35479600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:35478800-35480200	Enhancers	Placenta Amnion	Placenta Amnion
8	chr6:35478800-35480400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
9	chr6:35478800-35480800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:35479000-35479600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
11	chr6:35479000-35479600	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr6:35479000-35479800	Flanking Active TSS	Primary hematopoietic stem cells	blood
13	chr6:35479000-35479800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
14	chr6:35479200-35479600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr6:35479200-35479600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:35479200-35479600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:35479200-35479600	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
18	chr6:35479200-35479800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
19	chr6:35479200-35479800	Bivalent Enhancer	Fetal Thymus	thymus
20	chr6:35479200-35480000	Bivalent/Poised TSS	Brain Germinal Matrix	brain
21	chr6:35479200-35480000	Enhancers	Placenta	Placenta
22	chr6:35479200-35480200	Active TSS	H9 Cell Line	embryonic stem cell
23	chr6:35479200-35480200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
24	chr6:35479200-35480200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
25	chr6:35479200-35480200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr6:35479200-35480200	Bivalent/Poised TSS	Fetal Brain Female	brain
27	chr6:35479200-35480200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
28	chr6:35479200-35480200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr6:35479200-35480400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
30	chr6:35479400-35479600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
31	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr6:35479400-35479600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr6:35479400-35479600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
34	chr6:35479400-35479600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
35	chr6:35479400-35479600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
36	chr6:35479400-35479600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
40	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
41	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
42	chr6:35479400-35479600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
43	chr6:35479400-35479600	Bivalent Enhancer	Left Ventricle	heart
44	chr6:35479400-35479600	Flanking Active TSS	Ovary	ovary
45	chr6:35479400-35479600	Flanking Active TSS	Right Ventricle	heart
46	chr6:35479400-35479800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr6:35479400-35479800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr6:35479400-35479800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
49	chr6:35479400-35479800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr6:35479400-35479800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin

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