Variant report

Variant	rs554228902
Chromosome Location	chr11:55705313-55705314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:55705284-55705334	SAEC	small airway:	n/a
2	chr11:55705284-55705334	HRPEpiC	eye:	n/a
3	chr11:55705284-55705334	ECC-1	luminal epithelium:	n/a
4	chr11:55705284-55705334	SK-N-SH	brain:	n/a
5	chr11:55705284-55705334	RPTEC	kidney:	n/a
6	chr11:55705284-55705334	A549	lung:	n/a
7	chr11:55705284-55705334	SK-N-MC	brain:	n/a
8	chr11:55705284-55705334	NB4	blood:	n/a
9	chr11:55705284-55705334	Jurkat	blood:	n/a
10	chr11:55705284-55705334	HEK293	kidney:	embryo
11	chr11:55705284-55705334	HRE	kidney:	n/a
12	chr11:55705284-55705334	AG04449	skin:	fetal
13	chr11:55705284-55705334	PFSK-1	brain:	n/a
14	chr11:55705284-55705334	CMK	blood:	n/a
15	chr11:55705284-55705334	SKMC	muscle:	n/a
16	chr11:55705284-55705334	AG04450	lung:	fetal
17	chr11:55705284-55705334	PrEC	prostate:	n/a
18	chr11:55705284-55705334	U87	brain:	n/a
19	chr11:55705284-55705334	AG09309	skin:	n/a
20	chr11:55705284-55705334	HL-60	blood:	n/a
21	chr11:55705284-55705334	H1-hESC	embryonic stem cell:	embryo
22	chr11:55705284-55705334	HRCEpiC	kidney:	n/a
23	chr11:55705284-55705334	HCPEpiC	choroid plexus:	n/a
24	chr11:55705284-55705334	ovcar-3	ovarian:	n/a
25	chr11:55705284-55705334	GM06990	blood:	n/a
26	chr11:55705284-55705334	AG09319	gingival:	n/a
27	chr11:55705284-55705334	HCM	heart:	n/a
28	chr11:55705284-55705334	AG10803	skin:	n/a
29	chr11:55705284-55705334	SK-N-SH_RA	brain:	n/a
30	chr11:55705284-55705334	Caco-2	colon:	n/a
31	chr11:55705284-55705334	HIPEpiC	eye:	n/a
32	chr11:55705284-55705334	HCT-116	colon:	n/a
33	chr11:55705284-55705334	HEEpiC	esophagus:	n/a
34	chr11:55705284-55705334	IMR90	lung:	fetal
35	chr11:55705284-55705334	BE2_C	brain:	n/a
36	chr11:55705284-55705334	HPAEpiC	pulmonary alveolar:	n/a
37	chr11:55705284-55705334	HAEpiC	amniotic membrane:	n/a
38	chr11:55705284-55705334	NHBE	bronchial:	n/a
39	chr11:55705284-55705334	MCF-7	breast:	n/a
40	chr11:55705284-55705334	BJ	skin:	n/a
41	chr11:55705284-55705334	MCF10A-Er-Src	breast:	n/a
42	chr11:55705284-55705334	HMEC	breast:	n/a
43	chr11:55705284-55705334	NT2-D1	testis:	n/a
44	chr11:55705284-55705334	ProgFib	skin:	n/a
45	chr11:55705284-55705334	HNPCEpiC	eye:	n/a
46	chr11:55705284-55705334	T-47D	breast:	n/a
47	chr11:55705284-55705334	GM12891	blood:	n/a
48	chr11:55705284-55705334	AoSMC	blood vessel:	n/a
49	chr11:55705284-55705334	GM12892	blood:	n/a
50	chr11:55705284-55705334	PANC-1	pancreas:	n/a

No data

Variant related genes	Relation type
OR5I1	CpG island

Extended variants
information (count: 49 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:49 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv554797	chr11:55035411-55864161	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
2	nsv1067779	chr11:55086995-55980406	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
3	nsv491694	chr11:55086995-55980406	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv821668	chr11:55153930-55816828	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
5	nsv1036666	chr11:55460788-56010187	ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
6	nsv1049004	chr11:55460788-56014767	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
7	esv2830217	chr11:55460788-56017908	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
8	nsv1043441	chr11:55468512-56010187	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
9	nsv1044174	chr11:55501796-55862172	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
10	nsv982948	chr11:55676038-55741474	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv437718	chr11:55679983-55828756	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	esv2752628	chr11:55682604-55948184	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
13	nsv555078	chr11:55682622-55728281	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv468567	chr11:55682795-55728281	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv555079	chr11:55682795-55728281	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv468568	chr11:55682795-55819544	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
17	nsv555080	chr11:55682795-55819544	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv1042542	chr11:55683985-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv469959	chr11:55685556-55819544	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	esv3693086	chr11:55685556-55822802	Enhancers Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
21	nsv517590	chr11:55685556-55836620	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
22	nsv1037046	chr11:55685799-55731693	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
23	nsv1048664	chr11:55685799-55818882	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
24	nsv1053592	chr11:55685799-55819947	Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
25	nsv1043632	chr11:55685799-55823892	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
26	nsv1048070	chr11:55685799-55825580	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
27	nsv1050801	chr11:55685799-55826179	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
28	nsv1053326	chr11:55685799-55829456	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
29	esv34592	chr11:55685799-55842512	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
30	esv34825	chr11:55685824-55842512	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
31	nsv468569	chr11:55686728-55708815	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
32	nsv555083	chr11:55686728-55708815	Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
33	nsv1053583	chr11:55688373-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	nsv1036558	chr11:55689110-55826179	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv1047031	chr11:55689110-55827538	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
36	nsv1053027	chr11:55689863-55826179	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	esv2757446	chr11:55689863-55849156	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
38	esv2759829	chr11:55689863-55849156	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
39	nsv468570	chr11:55690437-55708815	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
40	nsv555084	chr11:55690437-55708815	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
41	nsv555085	chr11:55695156-55708641	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
42	nsv555086	chr11:55695156-55708815	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
43	nsv555087	chr11:55695156-55728281	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
44	nsv555088	chr11:55703650-55729751	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
45	nsv533150	chr11:55703736-55816312	Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
46	nsv468571	chr11:55703766-55708815	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	nsv555089	chr11:55703766-55708815	Inactive region	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	nsv468573	chr11:55704822-55729751	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
49	nsv555090	chr11:55704822-55729751	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links