Variant report

Variant rs554239579
Chromosome Location chr6:34517225-34517226
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:32 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:34512400-34517600 Enhancers Duodenum Mucosa Duodenum
2 chr6:34512600-34522200 Enhancers Stomach Mucosa stomach
3 chr6:34513000-34521400 Weak transcription HUES6 Cell Line embryonic stem cell
4 chr6:34513200-34524000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr6:34513800-34520600 Enhancers Gastric stomach
6 chr6:34514000-34517800 Enhancers Fetal Muscle Leg muscle
7 chr6:34514600-34521400 Weak transcription K562 blood
8 chr6:34515000-34517800 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
9 chr6:34515200-34517600 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr6:34515200-34517800 Weak transcription Adipose Nuclei Adipose
11 chr6:34515200-34518000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
12 chr6:34515200-34518600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr6:34515200-34518800 Weak transcription Spleen Spleen
14 chr6:34515200-34520800 Weak transcription Fetal Lung lung
15 chr6:34515200-34527600 Weak transcription Right Atrium heart
16 chr6:34515800-34518600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr6:34516000-34519800 Weak transcription Fetal Intestine Small intestine
18 chr6:34516000-34520800 Weak transcription Breast Myoepithelial Primary Cells Breast
19 chr6:34516200-34518000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr6:34516400-34517800 Bivalent Enhancer Fetal Muscle Trunk muscle
21 chr6:34516400-34518800 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr6:34516600-34517800 Strong transcription iPS DF 19.11 Cell Line embryonic stem cell
23 chr6:34516800-34517600 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr6:34516800-34518000 Weak transcription A549 lung
25 chr6:34517000-34517600 Bivalent Enhancer Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
26 chr6:34517000-34517800 Enhancers Placenta Placenta
27 chr6:34517000-34517800 Enhancers NHEK skin
28 chr6:34517000-34518000 Genic enhancers Fetal Stomach stomach
29 chr6:34517200-34517800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
30 chr6:34517200-34517800 Enhancers HMEC breast
31 chr6:34517200-34518000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
32 chr6:34517200-34518400 Weak transcription Colonic Mucosa Colon

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