Variant report

Variant	rs554242434
Chromosome Location	chr12:67925631-67925632
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67919312..67922056-chr12:67923127..67926496,3	MCF-7	breast:
2	chr12:67925081..67927690-chr12:67930273..67933177,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040339	chr12:67925018-67963239	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67911600-67927600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:67919200-67927600	Weak transcription	Ovary	ovary
3	chr12:67919200-67928600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr12:67919200-67933000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr12:67920200-67928400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:67920600-67928400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr12:67920600-67928600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr12:67920600-67928600	Weak transcription	Psoas Muscle	Psoas
9	chr12:67921600-67928400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr12:67921800-67928600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr12:67921800-67928600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:67922000-67928600	Weak transcription	Esophagus	oesophagus
13	chr12:67924200-67928600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:67924800-67926200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr12:67925000-67925800	Enhancers	HSMM	muscle
16	chr12:67925000-67926200	Enhancers	NH-A	brain
17	chr12:67925200-67925800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:67925200-67934800	Weak transcription	Gastric	stomach
19	chr12:67925400-67927600	Weak transcription	HSMMtube	muscle
20	chr12:67925600-67926400	Weak transcription	Fetal Brain Male	brain
21	chr12:67925600-67926800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr12:67925600-67927000	Weak transcription	NHEK	skin
23	chr12:67925600-67927200	Weak transcription	HMEC	breast
24	chr12:67925600-67927600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr12:67925600-67927800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:67925600-67927800	Weak transcription	Osteobl	bone
27	chr12:67925600-67928600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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