Variant report

Variant	rs554243518
Chromosome Location	chr19:35577878-35577879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35568285..35570612-chr19:35575218..35577973,3	MCF-7	breast:
2	chr19:35576238..35588046-chr19:35602523..35611687,25	MCF-7	breast:
3	chr19:35576917..35579149-chr19:35607509..35611279,4	MCF-7	breast:
4	chr19:35577004..35579582-chr19:35584935..35587139,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC020907.3-1	chr19:35577860-35578004	ENSG00000227392.1

Variant related genes	Relation type
ENSG00000089356	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv911611	chr19:35483679-35589920	Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv911612	chr19:35501051-35602498	Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
4	nsv911614	chr19:35570307-35648365	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
5	nsv525108	chr19:35577870-35589920	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv911615	chr19:35577870-35648365	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
7	nsv911616	chr19:35577870-35669071	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35560600-35581600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr19:35572000-35582200	Enhancers	Primary B cells from peripheral blood	blood
3	chr19:35573800-35579800	Enhancers	Primary B cells from cord blood	blood
4	chr19:35574200-35579600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:35574800-35579000	Weak transcription	Liver	Liver
6	chr19:35575200-35581000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr19:35575400-35578800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr19:35575600-35578000	Enhancers	Fetal Muscle Leg	muscle
9	chr19:35575600-35579000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr19:35575600-35579200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr19:35575600-35579200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr19:35575600-35581200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:35576200-35578000	Enhancers	Primary T cells fromperipheralblood	blood
14	chr19:35576200-35580600	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr19:35576400-35578400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr19:35576600-35578200	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr19:35576600-35578400	Enhancers	Brain Angular Gyrus	brain
18	chr19:35576600-35579400	Enhancers	Brain Hippocampus Middle	brain
19	chr19:35576800-35579200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr19:35576800-35579800	Enhancers	Brain Cingulate Gyrus	brain
21	chr19:35577000-35578000	Enhancers	HSMM	muscle
22	chr19:35577200-35579800	Enhancers	Brain Substantia Nigra	brain
23	chr19:35577400-35578000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr19:35577400-35578200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr19:35577400-35581200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr19:35577600-35578200	Enhancers	GM12878-XiMat	blood
27	chr19:35577600-35579000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr19:35577600-35581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr19:35577800-35579000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr19:35577800-35579200	Weak transcription	HSMMtube	muscle
31	chr19:35577800-35581200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr19:35577800-35581200	Weak transcription	Brain Anterior Caudate	brain
33	chr19:35577800-35581600	Weak transcription	Spleen	Spleen

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