Variant report

Variant	rs554252003
Chromosome Location	chr5:114697388-114697389
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114690800-114701400	Weak transcription	Hela-S3	cervix
2	chr5:114695400-114697400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:114696400-114701400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:114696400-114701400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:114696400-114701400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:114696400-114701400	Weak transcription	NH-A	brain
7	chr5:114696400-114701400	Weak transcription	NHLF	lung
8	chr5:114696400-114701600	Weak transcription	Osteobl	bone
9	chr5:114696400-114701800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:114696600-114701400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:114696600-114701400	Weak transcription	HSMMtube	muscle
12	chr5:114696600-114701600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr5:114696600-114701600	Weak transcription	A549	lung
14	chr5:114696600-114701800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:114696800-114702000	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:114696800-114704200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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