Variant report

Variant	rs554263035
Chromosome Location	chr3:150583348-150583349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150558309..150558816-chr3:150582852..150583509,2	MCF-7	breast:
2	chr3:150439194..150440771-chr3:150583171..150584932,2	MCF-7	breast:
3	chr3:150505248..150506241-chr3:150582658..150583739,6	K562	blood:
4	chr3:150478755..150482911-chr3:150581723..150585653,5	MCF-7	breast:
5	chr3:150438851..150440084-chr3:150582767..150583714,6	MCF-7	breast:
6	chr3:150439035..150439884-chr3:150583116..150584203,3	MCF-7	breast:
7	chr3:150438822..150439787-chr3:150582598..150583745,7	K562	blood:
8	chr3:150548154..150548723-chr3:150582876..150583541,2	MCF-7	breast:
9	chr3:150583250..150586861-chr3:150588416..150592183,4	K562	blood:
10	chr3:150482364..150486179-chr3:150581053..150584766,4	MCF-7	breast:
11	chr3:150505282..150506183-chr3:150582828..150583680,5	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases
2	nsv877646	chr3:150582992-150641304	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150580000-150584400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:150582600-150583400	Enhancers	Placenta	Placenta
3	chr3:150582600-150583600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:150583000-150583400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr3:150583000-150583400	Enhancers	Liver	Liver
6	chr3:150583000-150583400	Flanking Active TSS	Stomach Mucosa	stomach
7	chr3:150583000-150583400	Enhancers	Osteobl	bone
8	chr3:150583000-150583600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:150583000-150583600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:150583000-150583600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr3:150583000-150583600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr3:150583000-150583600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
13	chr3:150583200-150583600	Enhancers	Hela-S3	cervix
14	chr3:150583200-150583800	Enhancers	Fetal Heart	heart
15	chr3:150583200-150584400	Weak transcription	Primary hematopoietic stem cells	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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