Variant report

Variant	rs554292279
Chromosome Location	chr4:149133327-149133328
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032794	chr4:149046598-149135489	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537295	chr4:149046598-149135489	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149112400-149137400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr4:149115800-149137400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:149117200-149138000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:149123600-149150200	Weak transcription	Right Ventricle	heart
5	chr4:149124000-149133400	Weak transcription	Pancreas	Pancrea
6	chr4:149124000-149136400	Weak transcription	Brain Angular Gyrus	brain
7	chr4:149125000-149133400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:149125000-149135600	Weak transcription	Ovary	ovary
9	chr4:149125200-149136000	Weak transcription	Psoas Muscle	Psoas
10	chr4:149126000-149135600	Weak transcription	Brain Substantia Nigra	brain
11	chr4:149126000-149136600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:149126200-149135400	Weak transcription	Brain Cingulate Gyrus	brain
13	chr4:149127000-149135400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr4:149129600-149133400	Weak transcription	Lung	lung
15	chr4:149130400-149133800	Enhancers	Stomach Smooth Muscle	stomach
16	chr4:149130400-149138800	Enhancers	Fetal Heart	heart
17	chr4:149131400-149133400	Weak transcription	Right Atrium	heart
18	chr4:149131600-149133600	Enhancers	Rectal Smooth Muscle	rectum
19	chr4:149131800-149135800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr4:149132000-149133800	Enhancers	Colon Smooth Muscle	Colon
21	chr4:149132000-149134200	Enhancers	HSMMtube	muscle
22	chr4:149132200-149133600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:149132200-149133800	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr4:149132600-149135600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr4:149132800-149133400	Enhancers	Aorta	Aorta
26	chr4:149132800-149133400	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr4:149133000-149134400	Enhancers	Fetal Kidney	kidney
28	chr4:149133200-149133600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:149133200-149133800	Enhancers	Left Ventricle	heart
30	chr4:149133200-149134200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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