Variant report

Variant	rs554313250
Chromosome Location	chr14:68995279-68995280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:68995172..68997333-chr14:69028182..69030145,2	MCF-7	breast:
2	chr14:68994426..68996258-chr14:69013993..69016421,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2198876	chr14:68995187-68995656	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68987400-68996200	Enhancers	Pancreas	Pancrea
2	chr14:68990000-68995400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr14:68990000-68995600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:68990000-68996000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:68992600-68996000	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:68993000-68995800	Enhancers	Liver	Liver
7	chr14:68993200-68995600	Enhancers	Colon Smooth Muscle	Colon
8	chr14:68993600-68996600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:68993800-68995400	Enhancers	Primary B cells from cord blood	blood
10	chr14:68993800-68995800	Enhancers	Primary B cells from peripheral blood	blood
11	chr14:68993800-68996000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr14:68994000-68995800	Enhancers	Hela-S3	cervix
13	chr14:68994200-68995800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:68994200-68996000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr14:68994400-69001800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:68994600-68996000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:68994800-68996000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr14:68995000-68995800	Weak transcription	Stomach Mucosa	stomach
19	chr14:68995000-69001200	Weak transcription	HSMMtube	muscle
20	chr14:68995200-68995600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr14:68995200-68995600	Weak transcription	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links