Variant report

Variant	rs554313404
Chromosome Location	chr5:70648570-70648571
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GTF2H2-3	chr5:70647682-70649750	ENSG00000250387
2	lnc-GTF2H2-3	chr5:70647682-70649750	NONHSAT102012

Extended variants
information (count: 40 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:40 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1805631	chr5:69705362-70657888	Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv529287	chr5:69732192-70716662	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv881986	chr5:69830067-70649421	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1033366	chr5:70254883-70710447	Weak transcription Strong transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv882135	chr5:70275720-70689452	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv433373	chr5:70291250-70649421	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
7	nsv533712	chr5:70369930-70657718	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv882156	chr5:70379466-70664663	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv533636	chr5:70386570-70663068	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1034703	chr5:70391173-70995695	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	esv1813375	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
12	esv1846606	chr5:70391749-70663300	Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
13	esv1812997	chr5:70391881-70657688	Weak transcription Enhancers Strong transcription Genic enhancers	TF binding region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv1802971	chr5:70443659-70660252	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
15	esv1792558	chr5:70461915-70659556	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
16	esv1804508	chr5:70488704-70660252	Enhancers Genic enhancers Strong transcription Weak transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
17	esv1805483	chr5:70489943-70660252	Weak transcription Genic enhancers Enhancers Strong transcription	TF binding region lncRNA	4 gene(s)	inside rSNPs	diseases
18	nsv882166	chr5:70516801-70649421	Weak transcription Enhancers Genic enhancers Strong transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv882167	chr5:70516801-70664663	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv980680	chr5:70530575-70702151	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
21	esv11712	chr5:70532208-70662030	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
22	esv3360443	chr5:70532896-70661394	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
23	esv3493356	chr5:70533146-70650344	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
24	esv3493357	chr5:70533146-70650344	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
25	esv3333982	chr5:70533146-70656744	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
26	esv1813006	chr5:70535624-70660252	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
27	nsv882168	chr5:70541571-70649421	Enhancers	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
28	nsv882169	chr5:70541571-70679626	Weak transcription Enhancers	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
29	nsv882170	chr5:70556976-70664663	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
30	nsv882171	chr5:70556976-70667205	Enhancers Weak transcription	TF binding region lncRNA	3 gene(s)	inside rSNPs	diseases
31	esv1806868	chr5:70563283-70660252	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
32	esv1806453	chr5:70566632-70660982	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
33	nsv882172	chr5:70567610-70667205	Enhancers Weak transcription	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv882173	chr5:70567610-70689452	Weak transcription Enhancers Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
35	esv1801998	chr5:70575613-70656393	Enhancers	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
36	nsv882174	chr5:70576973-70679626	Weak transcription Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
37	nsv882175	chr5:70576973-70689452	Enhancers Weak transcription Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
38	esv1813661	chr5:70588850-70659556	Inactive region	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
39	esv3471079	chr5:70647396-70653394	Inactive region	lncRNA	n/a	inside rSNPs	diseases
40	esv3471080	chr5:70647396-70653394	Inactive region	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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