Variant report

Variant	rs554314001
Chromosome Location	chr17:38129221-38129222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv1007042	chr17:38128988-38130022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38122200-38130600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr17:38122200-38130600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr17:38124000-38129600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr17:38124000-38134600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr17:38127800-38130200	Weak transcription	Placenta	Placenta
6	chr17:38128000-38129600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr17:38128000-38131400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr17:38128400-38130400	Enhancers	Osteobl	bone
9	chr17:38129000-38129800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:38129000-38130200	Weak transcription	Brain Hippocampus Middle	brain
11	chr17:38129000-38130400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr17:38129000-38130600	Weak transcription	Primary B cells from cord blood	blood
13	chr17:38129000-38132200	Enhancers	K562	blood
14	chr17:38129200-38129600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links