Variant report

Variant	rs554371917
Chromosome Location	chr10:116851974-116851975
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr10:116851661-116853904	H1-neurons	neurons:	n/a	chr10:116852294-116852307
2	MXI1	chr10:116850943-116855017	SK-N-SH	brain:	n/a	n/a
3	E2F6	chr10:116851974-116852888	H1-hESC	embryonic stem cell:	n/a	chr10:116852331-116852340
4	JUND	chr10:116851708-116853413	SK-N-SH	brain:	n/a	n/a
5	RFX5	chr10:116851968-116852133	H1-hESC	embryonic stem cell:	n/a	n/a
6	ZNF263	chr10:116851894-116853832	HEK293-T-REx	kidney:	n/a	chr10:116852877-116852886 chr10:116853398-116853407
7	POLR2A	chr10:116851871-116853813	H1-hESC	embryonic stem cell:	n/a	n/a

Variant related genes	Relation type
ATRNL1	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1039002	chr10:116643095-116879483	Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	esv2761634	chr10:116643095-116879495	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv1045654	chr10:116654574-116879483	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
8	nsv1043242	chr10:116655057-116883386	Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv831997	chr10:116689552-116855698	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
10	nsv831998	chr10:116847998-116969618	Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3351020	chr10:116851912-116854210	Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116851000-116852000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr10:116851000-116852000	Enhancers	Colon Smooth Muscle	Colon
3	chr10:116851200-116852000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:116851400-116852000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr10:116851400-116852000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
6	chr10:116851400-116853400	Active TSS	Stomach Smooth Muscle	stomach
7	chr10:116851600-116852000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
8	chr10:116851600-116852000	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
9	chr10:116851600-116852000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr10:116851600-116852000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr10:116851600-116852000	Bivalent Enhancer	Fetal Intestine Small	intestine
12	chr10:116851600-116852200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:116851600-116852200	Enhancers	Placenta	Placenta
14	chr10:116851600-116852600	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum
15	chr10:116851600-116853200	Active TSS	Brain Cingulate Gyrus	brain
16	chr10:116851600-116854200	Active TSS	Brain Inferior Temporal Lobe	brain
17	chr10:116851600-116855800	Active TSS	Ovary	ovary
18	chr10:116851600-116856200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:116851800-116852000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
20	chr10:116851800-116852000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr10:116851800-116852000	Flanking Active TSS	Fetal Stomach	stomach
22	chr10:116851800-116852000	Bivalent Enhancer	Rectal Smooth Muscle	rectum
23	chr10:116851800-116852000	Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr10:116851800-116852000	Bivalent/Poised TSS	Dnd41	blood
25	chr10:116851800-116852000	Bivalent Enhancer	NH-A	brain
26	chr10:116851800-116852200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
27	chr10:116851800-116852200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
28	chr10:116851800-116852200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr10:116851800-116852200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
30	chr10:116851800-116852200	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
31	chr10:116851800-116852200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
32	chr10:116851800-116852200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr10:116851800-116852200	Active TSS	Brain Germinal Matrix	brain
34	chr10:116851800-116852200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
35	chr10:116851800-116852200	Flanking Active TSS	Fetal Brain Male	brain
36	chr10:116851800-116852200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
37	chr10:116851800-116852200	Flanking Active TSS	Fetal Lung	lung
38	chr10:116851800-116852600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr10:116851800-116852600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr10:116851800-116852600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
41	chr10:116851800-116854200	Active TSS	Fetal Brain Female	brain
42	chr10:116851800-116854400	Active TSS	Fetal Kidney	kidney
43	chr10:116851800-116854800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr10:116851800-116856200	Active TSS	Brain Anterior Caudate	brain

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