Variant report

Variant	rs554385321
Chromosome Location	chr4:15761714-15761715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2760884	chr4:15759680-15776181	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv1805487	chr4:15760071-15768467	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv1810566	chr4:15760071-15768467	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2421413	chr4:15760071-15768467	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv441859	chr4:15760071-15768467	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv436428	chr4:15760175-15768831	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3464815	chr4:15760284-15768947	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3464814	chr4:15760295-15768868	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3464813	chr4:15760316-15768908	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3464816	chr4:15760386-15768832	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv11795	chr4:15760451-15768822	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv516315	chr4:15760487-15767752	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv514198	chr4:15760715-15764713	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15752600-15767600	Weak transcription	Fetal Intestine Small	intestine
2	chr4:15759200-15765400	Weak transcription	Thymus	Thymus
3	chr4:15759200-15765600	Enhancers	Dnd41	blood
4	chr4:15759200-15766400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr4:15759200-15767800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:15759400-15762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:15759400-15763400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:15759600-15762200	Weak transcription	Fetal Thymus	thymus
9	chr4:15759600-15763000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr4:15759600-15763400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr4:15759800-15762000	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr4:15759800-15762000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr4:15759800-15766200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr4:15760000-15767200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr4:15760000-15767400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr4:15760200-15767200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:15761000-15767200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr4:15761200-15763000	Weak transcription	Primary T cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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