Variant report

Variant	rs554404508
Chromosome Location	chr6:30086641-30086642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv601476	chr6:30085838-30091311	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30082000-30089400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:30082200-30087400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr6:30082400-30087200	Weak transcription	Hela-S3	cervix
4	chr6:30082400-30091000	Weak transcription	HepG2	liver
5	chr6:30086000-30086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:30086200-30088000	Enhancers	Fetal Intestine Large	intestine
7	chr6:30086200-30092600	Enhancers	Fetal Intestine Small	intestine
8	chr6:30086400-30087600	Enhancers	Stomach Mucosa	stomach
9	chr6:30086400-30087600	Enhancers	A549	lung
10	chr6:30086400-30088000	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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