Variant report

Variant	rs554406531
Chromosome Location	chr14:71888808-71888809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:71786410..71788050-chr14:71885965..71888835,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197555	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3388109	chr14:71888248-71908062	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71866000-71889000	Weak transcription	Dnd41	blood
2	chr14:71867200-71892200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr14:71868200-71891400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr14:71869600-71904200	Weak transcription	Hela-S3	cervix
5	chr14:71870600-71891000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr14:71871600-71899600	Weak transcription	Primary B cells from cord blood	blood
7	chr14:71874400-71897000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:71875800-71889400	Weak transcription	Fetal Kidney	kidney
9	chr14:71875800-71897400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr14:71876000-71891000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:71876200-71889000	Weak transcription	HSMM	muscle
12	chr14:71876200-71890800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr14:71876200-71896800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr14:71878200-71891000	Weak transcription	Liver	Liver
15	chr14:71878400-71891400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr14:71878600-71897200	Weak transcription	Thymus	Thymus
17	chr14:71878600-71905200	Weak transcription	Aorta	Aorta
18	chr14:71881200-71899000	Weak transcription	Fetal Intestine Small	intestine
19	chr14:71882400-71904400	Weak transcription	NH-A	brain
20	chr14:71882800-71891200	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:71883400-71891000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr14:71883800-71890200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr14:71883800-71890800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr14:71883800-71892200	Weak transcription	HMEC	breast
25	chr14:71883800-71905800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr14:71884000-71889000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr14:71884000-71889200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr14:71884000-71890000	Weak transcription	NHEK	skin
29	chr14:71884000-71897200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:71885600-71889400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:71885800-71890200	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:71885800-71890800	Weak transcription	NHDF-Ad	bronchial
33	chr14:71885800-71915400	Weak transcription	Pancreas	Pancrea
34	chr14:71887000-71889800	Strong transcription	Primary B cells from peripheral blood	blood
35	chr14:71887000-71891200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr14:71887200-71890800	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr14:71887400-71889400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr14:71888200-71889600	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr14:71888400-71889600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:71888400-71889800	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr14:71888600-71889600	Strong transcription	Primary T cells from cord blood	blood
42	chr14:71888600-71890000	Strong transcription	Osteobl	bone
43	chr14:71888800-71889600	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr14:71888800-71890000	ZNF genes & repeats	GM12878-XiMat	blood
45	chr14:71888800-71890800	Weak transcription	Cortex derived primary cultured neurospheres	brain

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