Variant report

Variant	rs554429236
Chromosome Location	chr6:15662058-15662059
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15660394..15662870-chr6:15679792..15681475,2	K562	blood:
2	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
3	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
4	chr1:153621962..153623668-chr6:15660534..15662735,2	MCF-7	breast:
5	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
6	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15615200-15662200	Weak transcription	Gastric	stomach
2	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
4	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
5	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
6	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
7	chr6:15648200-15662200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:15649800-15662200	Weak transcription	HSMM	muscle
9	chr6:15655600-15662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:15659000-15662200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:15659200-15662200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:15659800-15662200	Weak transcription	Psoas Muscle	Psoas
13	chr6:15659800-15662200	Weak transcription	HSMMtube	muscle
14	chr6:15661600-15662200	Weak transcription	Small Intestine	intestine
15	chr6:15661800-15662200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr6:15661800-15662200	Enhancers	Fetal Brain Male	brain
17	chr6:15661800-15662600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:15661800-15662600	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:15661800-15663400	Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr6:15661800-15663400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:15661800-15663600	Active TSS	Pancreatic Islets	Pancreatic Islet
22	chr6:15662000-15662200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:15662000-15662200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr6:15662000-15662200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr6:15662000-15662200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr6:15662000-15662200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:15662000-15662200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:15662000-15662200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr6:15662000-15662200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr6:15662000-15662200	Active TSS	Brain Germinal Matrix	brain
31	chr6:15662000-15662200	Active TSS	Colonic Mucosa	Colon
32	chr6:15662000-15662200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr6:15662000-15662200	Enhancers	Lung	lung
34	chr6:15662000-15662200	Enhancers	Placenta Amnion	Placenta Amnion
35	chr6:15662000-15662200	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr6:15662000-15662200	Flanking Active TSS	A549	lung
37	chr6:15662000-15662200	Flanking Active TSS	HepG2	liver
38	chr6:15662000-15662200	Transcr. at gene 5' and 3'	K562	blood
39	chr6:15662000-15662200	Flanking Active TSS	NHEK	skin
40	chr6:15662000-15662200	Flanking Active TSS	NHLF	lung
41	chr6:15662000-15662400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:15662000-15662400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
43	chr6:15662000-15662400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
44	chr6:15662000-15662400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr6:15662000-15662400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
46	chr6:15662000-15662400	Flanking Active TSS	Primary T cells from cord blood	blood
47	chr6:15662000-15662400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:15662000-15662400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
49	chr6:15662000-15662400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
50	chr6:15662000-15662400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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