Variant report

Variant	rs554449980
Chromosome Location	chr10:92618412-92618413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92618156-92618520	HCT-116	colon:	n/a	n/a
2	RCOR1	chr10:92618324-92618582	K562	blood:	n/a	n/a
3	SIN3A	chr10:92615640-92618428	H1-hESC	embryonic stem cell:	n/a	chr10:92617442-92617455 chr10:92617619-92617630
4	SPI1	chr10:92618178-92618459	HL-60	blood:	n/a	chr10:92618252-92618265 chr10:92618251-92618264 chr10:92618340-92618347
5	JUN	chr10:92618176-92618430	H1-hESC	embryonic stem cell:	n/a	n/a
6	STAT3	chr10:92618252-92618670	MCF10A-Er-Src	breast:	n/a	chr10:92618277-92618285 chr10:92618317-92618329
7	POLR2A	chr10:92618052-92618484	H1-neurons	neurons:	n/a	n/a
8	POLR2A	chr10:92618065-92618453	H1-neurons	neurons:	n/a	n/a
9	POLR2A	chr10:92617387-92618605	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr10:92618342-92618716	MCF10A-Er-Src	breast:	n/a	n/a
11	EBF1	chr10:92618285-92618503	GM12878	blood:	n/a	chr10:92618405-92618416

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92618080..92620435-chr10:92621216..92622913,2	K562	blood:
2	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:

Variant related genes	Relation type
HTR7	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv1815232	chr10:92617295-92618616	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv1823335	chr10:92617295-92618616	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv1840527	chr10:92617295-92618616	Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614400-92618600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr10:92614400-92618800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
3	chr10:92614400-92619000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:92614800-92618600	Bivalent/Poised TSS	Fetal Brain Female	brain
5	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:92615400-92618600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:92616000-92618600	Bivalent/Poised TSS	Fetal Stomach	stomach
8	chr10:92616600-92618600	Bivalent/Poised TSS	Rectal Mucosa Donor 31	rectum
9	chr10:92616800-92618800	Active TSS	NHLF	lung
10	chr10:92617000-92618600	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr10:92617000-92618600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr10:92617200-92618600	Active TSS	Brain Anterior Caudate	brain
13	chr10:92617200-92618600	Active TSS	Brain Substantia Nigra	brain
14	chr10:92617200-92618600	Active TSS	Rectal Smooth Muscle	rectum
15	chr10:92617400-92618600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
16	chr10:92617400-92618600	Active TSS	Brain Hippocampus Middle	brain
17	chr10:92617400-92618600	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr10:92617400-92618600	Active TSS	Pancreatic Islets	Pancreatic Islet
19	chr10:92617400-92618600	Active TSS	Right Atrium	heart
20	chr10:92617400-92618600	Active TSS	Spleen	Spleen
21	chr10:92617600-92618600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr10:92617600-92618600	Active TSS	Stomach Smooth Muscle	stomach
23	chr10:92618000-92618600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr10:92618000-92618600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr10:92618000-92618600	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr10:92618000-92618600	Active TSS	Fetal Kidney	kidney
27	chr10:92618000-92618600	Bivalent/Poised TSS	Fetal Lung	lung
28	chr10:92618000-92618600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
29	chr10:92618000-92618600	Flanking Active TSS	Osteobl	bone
30	chr10:92618000-92619000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
31	chr10:92618000-92619000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr10:92618000-92619200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr10:92618000-92619400	Flanking Active TSS	HMEC	breast
34	chr10:92618000-92619600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr10:92618200-92618600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
36	chr10:92618200-92618600	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr10:92618200-92618600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:92618200-92618600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:92618200-92618600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
40	chr10:92618200-92618600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
41	chr10:92618200-92618600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
42	chr10:92618200-92618600	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
43	chr10:92618200-92618600	Bivalent Enhancer	Fetal Heart	heart
44	chr10:92618200-92618600	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
45	chr10:92618200-92618600	Flanking Active TSS	NHDF-Ad	bronchial
46	chr10:92618200-92619000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr10:92618200-92619200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr10:92618400-92618600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr10:92618400-92618600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
50	chr10:92618400-92618600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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