Variant report

Variant rs554478027
Chromosome Location chr12:57400928-57400929
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:101 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:57399200-57401000 Enhancers Stomach Mucosa stomach
2 chr12:57399400-57401000 Active TSS Brain Hippocampus Middle brain
3 chr12:57399400-57401400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
4 chr12:57399600-57401000 Active TSS Foreskin Fibroblast Primary Cells skin01 Skin
5 chr12:57399800-57401000 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
6 chr12:57399800-57401000 Active TSS Brain Dorsolateral Prefrontal Cortex brain
7 chr12:57400200-57401600 Enhancers Spleen Spleen
8 chr12:57400200-57402000 Enhancers Primary T helper memory cells from peripheral blood 1 blood
9 chr12:57400200-57402200 Weak transcription ES-I3 Cell Line embryonic stem cell
10 chr12:57400200-57402600 Enhancers Primary T killer memory cells from peripheral blood blood
11 chr12:57400400-57401000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
12 chr12:57400400-57401000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
13 chr12:57400400-57401000 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
14 chr12:57400400-57401000 Flanking Active TSS Colonic Mucosa Colon
15 chr12:57400400-57401000 Flanking Active TSS Colon Smooth Muscle Colon
16 chr12:57400400-57401000 Flanking Active TSS Stomach Smooth Muscle stomach
17 chr12:57400400-57401200 Flanking Active TSS HepG2 liver
18 chr12:57400400-57401400 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
19 chr12:57400400-57401400 Flanking Active TSS Primary T helper cells PMA-I stimulated --
20 chr12:57400400-57402200 Weak transcription Small Intestine intestine
21 chr12:57400600-57401000 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
22 chr12:57400600-57401000 Enhancers Primary monocytes fromperipheralblood blood
23 chr12:57400600-57401000 Enhancers Primary neutrophils fromperipheralblood blood
24 chr12:57400600-57401000 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
25 chr12:57400600-57401000 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
26 chr12:57400600-57401000 Flanking Active TSS Adipose Nuclei Adipose
27 chr12:57400600-57401000 Flanking Active TSS Duodenum Mucosa Duodenum
28 chr12:57400600-57401000 Flanking Active TSS Duodenum Smooth Muscle Duodenum
29 chr12:57400600-57401000 Flanking Active TSS Fetal Intestine Small intestine
30 chr12:57400600-57401000 Enhancers Gastric stomach
31 chr12:57400600-57401000 Enhancers Pancreas Pancrea
32 chr12:57400600-57401000 Flanking Active TSS Skeletal Muscle Female skeletal muscle
33 chr12:57400600-57401200 Enhancers Fetal Heart heart
34 chr12:57400600-57401200 Enhancers Lung lung
35 chr12:57400600-57401400 Enhancers Primary mononuclear cells fromperipheralblood Blood
36 chr12:57400600-57401400 Enhancers Liver Liver
37 chr12:57400600-57402000 Enhancers Primary T killer naive cells fromperipheralblood blood
38 chr12:57400600-57402600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr12:57400600-57402800 Enhancers Primary T helper cells fromperipheralblood blood
40 chr12:57400600-57403200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr12:57400800-57401000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
42 chr12:57400800-57401000 Flanking Active TSS Brain Cingulate Gyrus brain
43 chr12:57400800-57401000 Enhancers Brain Germinal Matrix brain
44 chr12:57400800-57401000 Enhancers Esophagus oesophagus
45 chr12:57400800-57401000 Enhancers Fetal Lung lung
46 chr12:57400800-57401000 Enhancers Fetal Muscle Trunk muscle
47 chr12:57400800-57401000 Enhancers Fetal Muscle Leg muscle
48 chr12:57400800-57401000 Enhancers Placenta Placenta
49 chr12:57400800-57401000 Enhancers Left Ventricle heart
50 chr12:57400800-57401000 Enhancers Placenta Amnion Placenta Amnion

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