Variant report

Variant	rs554482078
Chromosome Location	chr6:150092773-150092774
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150068651..150072384-chr6:150088938..150093926,7	K562	blood:
2	chr6:150085048..150087027-chr6:150091947..150093777,2	MCF-7	breast:
3	chr6:150075319..150077363-chr6:150091174..150093691,2	MCF-7	breast:
4	chr6:150055968..150058286-chr6:150092691..150095282,2	K562	blood:

Variant related genes	Relation type
ENSG00000120265	Chromatin interaction
ENSG00000120253	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966666	chr6:150092480-150114661	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150071800-150092800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:150071800-150100200	Weak transcription	Gastric	stomach
3	chr6:150072000-150094200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
5	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
6	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
8	chr6:150073000-150094400	Weak transcription	Lung	lung
9	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
10	chr6:150074200-150101000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr6:150075800-150094800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
14	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
15	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
16	chr6:150081600-150101200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr6:150081800-150092800	Weak transcription	Spleen	Spleen
18	chr6:150081800-150092800	Weak transcription	HSMMtube	muscle
19	chr6:150082400-150092800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:150083600-150092800	Weak transcription	Ovary	ovary
21	chr6:150086200-150092800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:150087000-150093800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:150087000-150096600	Weak transcription	Esophagus	oesophagus
24	chr6:150087200-150095400	Strong transcription	Primary T cells from cord blood	blood
25	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
26	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr6:150087600-150117400	Weak transcription	Brain Substantia Nigra	brain
28	chr6:150087800-150092800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:150087800-150092800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr6:150087800-150092800	Weak transcription	Brain Anterior Caudate	brain
31	chr6:150087800-150092800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr6:150087800-150093000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150087800-150093000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr6:150087800-150093200	Weak transcription	HMEC	breast
35	chr6:150087800-150094000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:150087800-150101600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:150087800-150112000	Weak transcription	Right Ventricle	heart
38	chr6:150087800-150112400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr6:150088000-150093000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr6:150088000-150093000	Weak transcription	Fetal Lung	lung
41	chr6:150088000-150096600	Weak transcription	A549	lung
42	chr6:150088000-150096600	Weak transcription	NHEK	skin
43	chr6:150088000-150099600	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:150088000-150102400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr6:150088000-150111200	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:150088000-150112000	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:150088000-150123400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr6:150088200-150092800	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:150088200-150093000	Weak transcription	Primary hematopoietic stem cells	blood

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