Variant report

Variant	rs554505294
Chromosome Location	chr4:166176838-166176839
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166174096..166176952-chr4:166248446..166250542,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv966338	chr4:166176361-166179748	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166129600-166196800	Weak transcription	Pancreas	Pancrea
2	chr4:166130600-166200800	Weak transcription	Lung	lung
3	chr4:166131600-166196800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr4:166132200-166193800	Weak transcription	Fetal Brain Female	brain
5	chr4:166137800-166194200	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr4:166138400-166185600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:166144600-166218800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:166156200-166199200	Weak transcription	Ovary	ovary
9	chr4:166167400-166177000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:166170000-166210000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:166170600-166209600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:166175000-166180000	Enhancers	Fetal Heart	heart
13	chr4:166175400-166177400	Weak transcription	Brain Germinal Matrix	brain
14	chr4:166175800-166177200	Enhancers	Brain Angular Gyrus	brain
15	chr4:166175800-166177400	Enhancers	Brain Substantia Nigra	brain
16	chr4:166175800-166177400	Enhancers	GM12878-XiMat	blood
17	chr4:166175800-166177400	Enhancers	HUVEC	blood vessel
18	chr4:166176000-166177000	Enhancers	Primary T cells from cord blood	blood
19	chr4:166176000-166177000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr4:166176000-166177000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr4:166176000-166177000	Enhancers	Liver	Liver
22	chr4:166176000-166177200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr4:166176000-166177400	Enhancers	Adipose Nuclei	Adipose
24	chr4:166176000-166177400	Enhancers	Spleen	Spleen
25	chr4:166176000-166177600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:166176000-166177800	Enhancers	Primary B cells from peripheral blood	blood
27	chr4:166176000-166177800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:166176000-166178800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr4:166176200-166177600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
30	chr4:166176200-166178400	Enhancers	Primary hematopoietic stem cells	blood
31	chr4:166176400-166177000	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr4:166176400-166177000	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr4:166176400-166177000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:166176400-166177400	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr4:166176400-166177600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr4:166176400-166177800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr4:166176400-166179200	Enhancers	Fetal Thymus	thymus
38	chr4:166176600-166177000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr4:166176600-166177400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr4:166176600-166177400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr4:166176600-166177400	Enhancers	Fetal Lung	lung
42	chr4:166176600-166177400	Enhancers	Fetal Stomach	stomach
43	chr4:166176600-166177400	Enhancers	Left Ventricle	heart
44	chr4:166176600-166177600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
45	chr4:166176600-166178800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:166176600-166178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:166176800-166177000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:166176800-166177000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
49	chr4:166176800-166177000	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr4:166176800-166177000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

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